Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq48996 105 1e-17 seq24311 86.0 1e-11 >seq48996 Length=1832 Score = 105 bits (116), Expect = 1e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||| || || || || || || |||| || || |||||| || || | Sbjct 611 CGCAAAACCAAATGGAGGGTGGACTCCGTCTGAATGTTGTAATCATCCAGGTACATAATG 552 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || | ||| ||||||||||| ||||| || ||||| || || ||||| ||||| Sbjct 551 TCCTCAAGCTTTTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTG 492 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||| ||| |||| | || | ||| | ||||| |||| || || ||| Sbjct 491 TCCTGAATCAAATTTTTGACATGTGGGATGGAATCGTCGGGTTCCACTTGCAGGGTGATC 432 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAA 82801 ||||| |||||||| ||||| ||||| Sbjct 431 GTCTTTCCTGTCAAAGTCTTGACAAA 406 >seq24311 Length=1292 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || |||||||||||||| || |||||||| || || || || | | ||| |||| Sbjct 550 AGCACTAAGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCCGTCAATCGTCTGTTGTCT 491 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || |||||||| || |||||||| | ||| || || || | || | |||||| || Sbjct 490 TCCAGTTGTTTGCCGGCAAAGATGATTCTCTGCTGGTCAGAGGGAACTCCTTCTTTTGAC 431 Query 82719 TGAATCTTTGCTTTT--ACATTTTCAATCGT-ATCATTAGGTTCT-ACTTCCAAAGTTAT 82774 |||| |||| |||| | | | | ||||| ||| || || ||| |||||| | Sbjct 430 TGAA--TTTGATTTTTGAGGTCTGCGATCGTCGACAT--GGGACTGACTGACAAAGTCAG 375 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || ||| |||||| ||||| | |||||| Sbjct 374 CGTCTTTCCGCTCAGCGTCTTCACAAACAACTGCAT 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979981889527910