Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23124 132 7e-25 seq10895 116 5e-20 seq23761 113 6e-19 seq8712 105 1e-16 seq983 98.7 1e-14 seq88302 93.3 6e-13 seq83140 91.5 2e-12 >seq23124 Length=5215 Score = 132 bits (146), Expect = 7e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 724918 AGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGA 724977 |||| || ||||||||||||||| || | | ||| || || ||||| ||||||| Sbjct 2485 AGGTCCTGAAGCAGGTGCACCCCGAGACTGGT-----ATC-TCGAAGAAGTCGATGTCGA 2432 Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGG 725037 |||||||||| || |||||||||| |||| | ||| || ||||||| | ||| Sbjct 2431 TCATGAACTCTTTCATCAACGACATCTTCGATAGACTCGCCAACGAGGCCACCAGACTGA 2372 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 || | ||||||| | ||| | || | ||||||||||||||||||||||||| Sbjct 2371 TCCGATTCAACAAGAAGAGAACGCTGTCCAGCAGAGAGATCCAGACCGCCGTGCGCCTGA 2312 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | | ||| || || ||| |||||||||||| |||||||||| Sbjct 2311 TGCTCCCCGGAGAGCTCTCCAAGCACGCCGTCTCAGAGGGCACCA 2267 >seq10895 Length=16309 Score = 116 bits (128), Expect = 5e-20 Identities = 271/407 (67%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 1455867 AGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGG 1455926 || |||||||| || | || || || || || | ||||||||| ||||| |||||| Sbjct 9079 AGTGACGACGAACGTTACTTTATAAAACATATCTTGGCCTTTTTT-GCCGCATCCGATGG 9137 Query 1455927 CATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACG 1455986 || || || || |||||| ||| |||| || ||||||| | ||||| Sbjct 9138 GATTGTAAATGAAAATTTGGCCGAGAATTTTGTGAACGAAGTCCAATATTCGGAGGCCAA 9197 Query 1455987 TTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCT 1456046 || |||||||| |||||||| || || |||||||| || ||||||||||| || | Sbjct 9198 GTTCTTTTACGGATTCCAGATAATGATGGAGAACATCCATTCCGAAACCTACTCCCTGTT 9257 Query 1456047 GATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 ||| |||||||| || |||||| || || || ||| |||| || || || | Sbjct 9258 GATAGACACCTATGTAAAGGACGAAAAGGAAAAAAACATCCTTTTTCAGGCTATTGAGAA 9317 Query 1456107 GGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT 1456166 | || | | | ||||||||| || |||||| | | ||||| | | Sbjct 9318 CTTTCCAGCCATCAAGAAAAAGGCGGATTGGGCGCTTAGATGGAT--------TGATTCC 9369 Query 1456167 CGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGC 1456225 | | |||||||| || | ||| ||||||||| || || || || || || || || Sbjct 9370 CCAAGTTTTGCCGAACGATTGATCGCCTTTGCCGCTGTGGAAGGGATTTTCTTTTCCGGG 9429 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| || |||| |||||| | ||||| | || | |||||||| Sbjct 9430 GCTTTTTGTTCCATTTTTTGGTTGAAGAAAAGAGGGTTAATGCCCGG 9476 >seq23761 Length=1799 Score = 113 bits (124), Expect = 6e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 1455905 CTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAG 1455964 |||| ||||| || ||| ||||||||| ||||||||||| | | | || | | | Sbjct 1410 CTTTCTTCGCGGCTTCCGACGGCATCGTGCTGGAGAACCTGGCGGCCAGGTTCCTTCAGG 1469 Query 1455965 AGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCC 1456024 ||||||| |||| ||||| | || ||||| |||||||||||||| || ||||||| Sbjct 1470 AGGTCCAGATGCCTGAGGCCAGGGCCTTCTACGGATTCCAGATCGCCATGGAGAACATCC 1529 Query 1456025 ACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACC 1456084 |||||||| ||| || |||||||| ||| || ||||| | | |||||| || Sbjct 1530 ACTCTGAAGTGTACAGCCTGTTGATCGACCAGTACATCCAGGACGCAGAGGAGAAGAACG 1589 Query 1456085 ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 ||||| |||||| ||| ||||| | ||| ||| |||| Sbjct 1590 GACTCTTCACGGCCATCTCCACAGTGCCTGCAGTGCAGAAGAAGG 1634 >seq8712 Length=2309 Score = 105 bits (116), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 724918 AGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGA 724977 |||| || ||||||||||||||| || | | ||| || || ||||| ||||| | Sbjct 365 AGGTCCTGAAGCAGGTGCACCCCGAGACTGGT-----ATC-TCTAAGAAGTCGATGTCCA 312 Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGG 725037 |||||||||| || |||||||||| ||||| | ||| || ||||||| | ||| Sbjct 311 TCATGAACTCTTTCATCAACGACATCTTCGACAGACTCGCCAACGAGGCCACCAGGCTGA 252 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 | | ||||||| | || || || | ||||||||||||||||| | |||| Sbjct 251 TCAGGTTCAACAAGAAGAGAACTCTCTCCAGCAGAGAGATCCAGACCGCCGTCAGACTGA 192 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | | ||| || || ||| |||||||| || |||||||||| Sbjct 191 TGCTCCCCGGAGAGCTCTCCAAACACGCCGTGTCAGAGGGCACCA 147 >seq983 Length=6241 Score = 98.7 bits (108), Expect = 1e-14 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 259994 GATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCC 260053 || |||||||||||||||| ||||| || |||||||||||| | ||||||||| || Sbjct 226 GACTCGATCGAGGGCATCTTCGACACTCTGAAGCAGTGCGCGATGATCTCCAAGCACGCT 167 Query 260054 GGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACC 260113 || |||||||| | || | ||||| | | || || | | ||| | ||| ||| Sbjct 166 GGGGGCATCGGACTGGCGGTGCACAACATCAGAGCTCAGGACTCGTACATCAGGGGGACC 107 Query 260114 AACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 ||||| ||| |||||||| || |||||||| | || || ||||| Sbjct 106 AACGGAAGGTCAAACGGCCTCGTCCCCATGCTCAGAGTCTTCAACGA 60 >seq88302 Length=19118 Score = 93.3 bits (102), Expect = 6e-13 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 2140305 CCACTTTTTCCTAATGTATACACATGCGGATGTTCTACAAAAAGTAAATAATTGGGTGTT 2140364 ||||| || || || ||||||||||| |||||||| || || | |||| |||||| || Sbjct 10633 CCACTCTTGCCCAAGGTATACACATGAGGATGTTCCACGAACAAAAAATGATTGGGCGTA 10574 Query 2140365 GGTAAATCGAGTTCTTCTCTTCGGTTTTTGATTTTTAAGTCGACTATATCTTTGAAAATT 2140424 ||| | ||| ||||| ||||||||||| | ||| || || || | ||||| | Sbjct 10573 CTTAATGTGGCCCCTTGTCTTCTATTTTTGATTTTAAGGTCTACGATTTCCTGGAAAAGT 10514 Query 2140425 CT-TCCTGATATTCCCAGGTCGATTTATAATCTTTACTTCCTAAATCCTGAAGTTGAAtt 2140483 | || ||||| ||||||||| || || || | | ||| |||||||| | | Sbjct 10513 ATCTCTTGATACTCCCAGGTCTTCTTGTAGTCATGAAATCCCAAATCCTGTATCGCCACC 10454 Query 2140484 tttttATTCAT 2140494 ||||||||||| Sbjct 10453 TTTTTATTCAT 10443 >seq83140 Length=1468 Score = 91.5 bits (100), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || || ||||| ||||||||| |||| ||| ||||||||| || |||||| | |||||| Sbjct 1431 GGAGGAGGCAAACGCAAGGGCTCCTTCGCCATCTACCTGGAGCCCTGGCACTCAGACCTC 1372 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | ||| ||||| | ||||||||||||| ||| |||| || | ||| | Sbjct 1371 CTTGACTTCCTGGATTTGCGGAAGAACCACGGCA----AGGAGGAGCAC--AGAGCGAGG 1318 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | ||| || |||| |||||||| ||| | || || | | | | Sbjct 1317 GATCTCTTCTTCGGTCTCTGGATTCCTGACCTGTTCATGAGACGAGTGAAGGAGGACGGA 1258 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| || | | |||||| |||| || || ||| ||||||| || | || Sbjct 1257 GACTGGACGTTGATGTGCCCGAACGAGTGCCCTGGGCTGTCTGAATGCTGGGGGGAGGAG 1198 Query 262028 TTTGA 262032 ||||| Sbjct 1197 TTTGA 1193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7163662679883780