Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq13327 428 7e-115 seq303 376 4e-99 seq4620 143 4e-29 seq49863 131 2e-25 >seq13327 Length=3816 Score = 428 bits (474), Expect = 7e-115 Identities = 673/959 (70%), Gaps = 12/959 (1%) Strand=Plus/Minus Query 174498 CGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTA 174557 ||||| || |||| ||||| || | ||||| | || || || ||| ||| ||| Sbjct 2795 CGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCA---GTA 2739 Query 174558 T---GTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAA 174614 | |||||||| ||||| || | || || ||||| || || || ||||| ||||| Sbjct 2738 TCGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAG 2679 Query 174615 CCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 174674 ||||| | || || || | || ||||| || || ||||| || || || || || ||| Sbjct 2678 CCAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGT 2619 Query 174675 TCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGG 174734 ||||| || || ||| | || || || | | || || || | || ||||| Sbjct 2618 TCAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGA 2559 Query 174735 CTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCC 174794 | || ||||| || |||| |||| | ||||| | || ||| | || || | | Sbjct 2558 TTGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCA 2499 Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 ||| | || |||||||| ||| | ||| |||||||| ||| | ||||| || | ||| Sbjct 2498 TATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTA 2439 Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 || | ||||||||||||||||||||| || || ||||| ||||| || || |||| ||| Sbjct 2438 GCTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAA 2379 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || || ||||| | ||||| | || || |||||||||||||||| |||| | || Sbjct 2378 GGATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTA 2319 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| ||||| ||||| ||||| |||||||| ||||||||| ||||| ||||| || Sbjct 2318 TTCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTA 2259 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCT---CTTCACTTGTC 175091 || || || || || || || |||||||| || | ||||| | ||| | || || Sbjct 2258 TTTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATT-TC 2200 Query 175092 CGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAG 175151 | ||| | |||| ||| |||| || ||||| || || ||||| || ||| | || Sbjct 2199 --TATGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAA 2142 Query 175152 ACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 175211 || ||||| ||||| || || || || |||||||| ||| | ||||| |||| ||| Sbjct 2141 ACATATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGT 2082 Query 175212 TTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGG 175271 || || |||||||| || | ||||||||| | || || || || || || ||||| Sbjct 2081 TTTAATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGA 2022 Query 175272 TTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAG 175331 || || ||| | || || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 2021 TTAACAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAA 1962 Query 175332 TCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCT 175391 || | || || | | |||| | ||| | | || || ||| | | || | || Sbjct 1961 TCAATCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCA 1902 Query 175392 GGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 ||| || |||||||||||||||||| | || || ||||| ||||| |||||||| || Sbjct 1901 AATCTAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGATTTAGC 1843 >seq303 Length=42796 Score = 376 bits (416), Expect = 4e-99 Identities = 676/983 (69%), Gaps = 6/983 (1%) Strand=Plus/Minus Query 175881 GATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTGCC 175940 || || ||||| ||| ||||||| || |||||| | ||| |||| || |||||| | || Sbjct 27680 GAAAGATTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCG 27621 Query 175941 ATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCT 176000 | || || || || || || ||||| || || |||||||| | |||||||| || Sbjct 27620 GTCGGAGGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCA 27561 Query 176001 TCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCT 176060 ||| |||||| || ||| ||| ||| | || || ||||| || || || ||| || Sbjct 27560 TCTAGCTATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGC 27501 Query 176061 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGC--GGT 176118 ||||| || || ||| | ||| ||| ||||| ||| ||||||| |||| | | | | Sbjct 27500 ATGGGGCACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGG--ACTTTTAACTCGAT 27443 Query 176119 GGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTG 176178 || ||| ||||||| | || ||| | || | || || |||| | || | Sbjct 27442 GGTATCAAGTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAG 27383 Query 176179 GATTCATGCTTC-GTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCT 176237 |||| || || | || |||||| | ||||| | | | ||||| || || || Sbjct 27382 GATTT-TGTTTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTTCGTCCATATAATGCA 27324 Query 176238 ATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGT 176297 ||||| |||| ||||| || || || ||||| ||| ||| | | || || ||||| Sbjct 27323 ATTGCTTTCACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGT 27264 Query 176298 CAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTG 176357 ||| | || || ||||| || ||||| ||||| || || |||||||| || | Sbjct 27263 CAAGCGAGTTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTA 27204 Query 176358 TTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGT 176417 || |||| || || || ||||| |||||||| || |||||||||||||| || || ||| Sbjct 27203 TTCTTTCAAGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGT 27144 Query 176418 ATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATAT 176477 || |||| || || || | ||||| |||||||| | ||||| |||||||| ||||| Sbjct 27143 ATTTTAGGAGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATAT 27084 Query 176478 GAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACC 176537 ||||||| | | | ||||||| ||| || | ||||| |||||||| Sbjct 27083 AAAGATGGTGTGTCGTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACT 27024 Query 176538 TATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAAT 176597 ||||| ||||| || || || || || || || || || || || || || ||| ||| Sbjct 27023 TATTCAATGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAAC 26964 Query 176598 AAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGT 176657 ||||||||| | || ||||||||||| || || || || | || | || || | Sbjct 26963 AAGCGTTGGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCT 26904 Query 176658 ATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATT 176717 |||| || |||| || || | ||| | | || || ||||||||| |||||| | Sbjct 26903 TTTGGGATGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTA 26844 Query 176718 AGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAA 176777 ||||||| ||||||||||| || ||||| || || || || || || | ||||| ||| Sbjct 26843 CGAGCAGCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAA 26784 Query 176778 GGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAA 176837 ||| | | || || ||||| ||| ||||| ||||| || | |||||||| Sbjct 26783 GGAATCCGTGCTTGAATGGCTATGCAGGACCAACCTCATGAAAATTTCATTTTCCCAGAG 26724 Query 176838 GAAGTTCTACCTAGAGGTAACGC 176860 |||||| ||||| | || || || Sbjct 26723 GAAGTTTTACCTCGCGGAAATGC 26701 >seq4620 Length=65515 Score = 143 bits (158), Expect = 4e-29 Identities = 358/534 (67%), Gaps = 16/534 (3%) Strand=Plus/Minus Query 161166 AACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAAC 161225 |||| ||||||||||||||||| | || || || ||||| | || |||||| ||| Sbjct 49445 AACCGGATGAGATCTACAACCTTGCTGCGCAAAGCCATGTTCAGGTGAGTTTCGA--AAC 49388 Query 161226 CT--GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCG 161283 | || || || || | | ||||||||||| || | | | | ||||| | || Sbjct 49387 CGCCGAGTACACCGCCAATGCCGATGCTCTGGGTACGTTGCGGTTGCTCGAGGCGATACG 49328 Query 161284 TCTCCTAGGTATGACAGATAG--GGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTAT 161341 | || || ||| ||| || || ||| |||| ||||| || || || | || Sbjct 49327 CATTCTGGGGATGG-AGA-AGTCGGCCCGCTTCTATCAGGCGTCGACTTCGGAACTCTAC 49270 Query 161342 GGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATAT 161401 || ||| || || || || ||| || || || |||||||| || || || || ||| Sbjct 49269 GGCAAGGTTCAGGAAACGCCGCAGTCCGAGACCACGCCTTTCTATCCTCGCTCGCCCTAT 49210 Query 161402 GGCGTAGCTAAACTCTATGGATATTGGAT---TGTAAAGAACTACAGAGAGAGTTATGGG 161458 | || || || || |||| || ||| | ||| |||||| | || |||||| Sbjct 49209 GCCGCCGCCAAGCTGTATGCTTACTGGGTCACTGT---GAACTATCGCGAAGCCTATGGG 49153 Query 161459 ATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTC 161518 |||| || | || || || ||||| || ||| ||| || || ||||||||| Sbjct 49152 CTGCATGCTTCAAACGGCATCCTCTTCAATCACGAGAGCCCAATCCGTGGCGAGACTTTC 49093 Query 161519 GTAACCCGTAAGATTACTAGGGGACTATCCCGTATT-AGTACAGGACTACAGGATTGTCT 161577 || ||||| ||||| || ||| | || || | ||| || | |||||||| || Sbjct 49092 GTGACCCGCAAGATCACGCGGGCCGTGGCCGCGATCCATTAC-GGTCGCCAGGATTGCCT 49034 Query 161578 ATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGC 161637 || || |||||||| | | |||| ||||||||||| || ||||||||||| | Sbjct 49033 TTATCTCGGTAATCTCGATGCCCGACGGGATTGGGGTCACGCCCGCGACTATGTGGAAGG 48974 Query 161638 TATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 |||||||||||| | || |||||| | || || |||||||| |||| || || Sbjct 48973 CATGTGGTTGATGATGCAGCAGGAATCGCCCGACGACTATGTACTTGCGACGGG 48920 >seq49863 Length=10164 Score = 131 bits (144), Expect = 2e-25 Identities = 333/501 (66%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 161201 CATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAACC 161260 ||||| | || ||||| || ||| |||||||| | | | | |||| || || ||| Sbjct 10164 CATGTCCAGGTTTCTTTTGAAACACCGGAATATACGGGAAACGCGGATGGCCTTGGCACC 10105 Query 161261 CTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTATGACAGATAGGGTCCGTATCTACCAG 161320 | | | | || ||||| || || |||||||| || | | || ||||| ||| Sbjct 10104 TTGCGGATTCTTGATGCAGTCCGACTTTTAGGTATGGAAGGCAAGACTCGAATCTATCAG 10045 Query 161321 GCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCT 161380 |||||||| || || ||||| |||||| ||| || ||| ||| || || ||| Sbjct 10044 GCATCCACTTCCGAATTATATGGAAAGGTACAGGAGGTGCCCCAGTCAGAGACCACCCCT 9985 Query 161381 TTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATT---GTAAAG 161437 || || || || ||| |||| ||| || ||| | |||| ||||||||| ||| Sbjct 9984 TTTTATCCTCGTAGTCCCTATGCCGTGGCAAAAATGTATGCCTATTGGATTACCGTA--- 9928 Query 161438 AACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCA 161497 ||||| || || ||||| ||| ||| | | || ||| |||| || ||||| || Sbjct 9927 AACTATAGGGAAGCCTATGGTATGTTTGCCTGCAACGGAATTTTATTTAATCATGAATCG 9868 Query 161498 CCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGT 161557 || || || || ||||| ||||| | || ||||| || | |||| ||| Sbjct 9867 CCGATTCGTGGCGAAACTTTTGTAACGAGAAAAATTACAAGAGCCGCGGTACGTA-TAGC 9809 Query 161558 AC-AGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCA 161616 || || ||||||||| ||||| || || ||||| | ||| ||| |||||||| || Sbjct 9808 ACTGGGTCTACAGGATAAACTATATCTGGGCAATCTGGATGCAAAACGGGATTGGGGGCA 9749 Query 161617 TGCTGAAGACTATGT--GGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGAC 161674 || | |||||||| ||| | |||||| |||| |||| || || || || Sbjct 9748 CGCCAAGGACTATGTACGGATG--ATGTGGATGATCCTACAGGCAGATGAGCCAGAAGAT 9691 Query 161675 TATGTGATTGCCACAGGTAAA 161695 | || || |||||||||||| Sbjct 9690 TGGGTCATCGCCACAGGTAAA 9670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728591182837200