Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq13327 497 1e-135 seq303 343 2e-89 seq5591 93.3 5e-14 seq1811 91.5 2e-13 seq71784 86.0 8e-12 seq29682 82.4 9e-11 >seq13327 Length=3816 Score = 497 bits (550), Expect = 1e-135 Identities = 685/952 (72%), Gaps = 6/952 (1%) Strand=Plus/Minus Query 177878 CCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTAT 177937 ||| || ||| |||| ||||| || || | ||| | ||||| | || |||| ||| Sbjct 2796 CCGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAG-TAT 2738 Query 177938 C-TGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAAC 177996 | |||||||| | || || || || || || || || || || || || || ||||| | Sbjct 2737 CGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGC 2678 Query 177997 CCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTT 178056 | || | || || || | || || || || || ||||| || || || || || || Sbjct 2677 CAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTT 2618 Query 178057 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 178116 | || || |||||| | || || ||| | | || || || | |||| || || Sbjct 2617 CAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGAT 2558 Query 178117 TGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGG--TATCTATGC 178174 |||||||||| || |||| |||| |||| ||| | || ||| | || || || | || | Sbjct 2557 TGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGC-AT-C 2500 Query 178175 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 178234 ||| | || |||||||| ||| | ||||||||||| ||||| || || || | || Sbjct 2499 ATATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGT 2440 Query 178235 AGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCA 178294 ||| | |||||| ||||| |||||||||||||| ||||| || || || || |||| || Sbjct 2439 AGCTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACA 2380 Query 178295 AGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 178354 ||| || ||||| || | |||||| || || || ||||| |||||||||| |||||| || Sbjct 2379 AGGATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGT 2320 Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 ||||| ||||| || || || | |||||||| ||||||||| || || ||||| || Sbjct 2319 ATTCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGT 2260 Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474 ||| || || || | || ||||| ||||| || ||||| |||||||| | | || Sbjct 2259 ATTTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTC 2200 Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534 | || | |||| ||||||| || ||||| ||||| |||||||| ||| | || || Sbjct 2199 TATGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAAC 2140 Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594 ||| || ||||| || || || || |||||||| ||| | ||||| |||| || || Sbjct 2139 ATATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTT 2080 Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654 || ||||||||||| | ||||||||||| ||| || || |||||||||||||| || Sbjct 2079 TAATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATT 2020 Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 || ||| |||| | || || ||||| || || || ||||||||||| |||||||| || Sbjct 2019 AACAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATC 1960 Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774 ||| | || | | |||||||||| | | || || || | | || ||||| Sbjct 1959 AATCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAA 1900 Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGAT 178826 ||| || |||||||| ||||| ||||| ||||||||||| ||||| || ||| Sbjct 1899 TCTAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGAT 1848 >seq303 Length=42796 Score = 343 bits (380), Expect = 2e-89 Identities = 684/1005 (68%), Gaps = 10/1005 (1%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||| | | || | ||| | ||| | ||||| || || || ||| | | ||| Sbjct 27700 TGGACGATTTTATAAAGCAGGAAAGATTTATATTTGTTGGCTGATCCGGATTATTGCTTT 27641 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| || |||||| | || | || || || || || || |||| || || |||| Sbjct 27640 TTCCGACCGCTTATTTGGCGGTCGGAGGATGATTTGTGGGTACTACTTTCGTAACAAGTT 27581 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412 |||| | || ||||| || | |||||| || ||| ||| ||| | || || |||| Sbjct 27580 GGTATTCTCATGGTCTAGCATCTAGCTATCTAGAAGGTTGTAATTTTTTAACTGCTGCTG 27521 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || ||||| ||| || ||||| || || ||| | ||| ||| ||||| || ||| Sbjct 27520 TATCCACGCCGGCTAATTGCATGGGGCACTCGCTTTTATTACCTTGAGGTCCCGAAGCTC 27461 Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 |||| ||| || |||| ||| |||| || | || ||||| | || | || | Sbjct 27460 AGGGACTTTTAACTCGATGGTATCAAGTTGGAGGTTTATGAAATTTTATCGCCTTTCATG 27401 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGG-CAATTTGAACTTGCTCGCCTGATT--G 179589 | |||| | | || || || ||| | ||||||||| |||| | | | | Sbjct 27400 GGACCTTAGGGTTGGCAGGATTT-TGTTTAAGACAATTTGAAATTGCAAGGTTAGTGCAG 27342 Query 179590 GTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTT 179649 || || | || || ||||| |||||||| | ||||| ||||| || || || ||| | Sbjct 27341 GT-TC-GTCCATATAATGCAATTGCTTTCACCGGTCCAATTGCAGTTTTTGTATCTGTCT 27284 Query 179650 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 179709 | | || |||||||| || || | ||| ||||| || || ||||| || || | Sbjct 27283 TTTTAATTTATCCTTTAGGTCAAGCGAGTTGATTTTTTGCACCAAGTTTTGGAGTGGCTG 27224 Query 179710 CGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCC 179769 | || || || || || || ||| |||| || || || ||||| || || || || |||| Sbjct 27223 CCATTTTTAGATTTTTACTATTCTTTCAAGGGTTTCATAACTGAACACTGAATCCTTTCC 27164 Query 179770 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTA 179829 |||||||||| || || ||||| ||||||| || | | ||| |||||||||| | Sbjct 27163 ATATGATGGGTGTCGCAGGTATTTTAGGAGGTGCGTTATTGTCTGCCATCCATGGAGCGA 27104 Query 179830 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATT 179889 ||||| | ||||| || ||| ||||||| | | |||||| || ||| Sbjct 27103 CTGTACAAAATACCTTATATAAAGATGGTGTGTCGTATGACACCTTTCGTGCTTTTAGCC 27044 Query 179890 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 179949 | || || ||||||||||||||| ||||| || ||||| || || || || ||||| | Sbjct 27043 CAACGCAATTAGAAGAGACTTATTCAATGGTAACCGCAAATCGTTTTTGATCTCAGATTT 26984 Query 179950 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180009 | || | || |||||||||||||| ||| | ||||| || ||||| || || || || | Sbjct 26983 TTGGAGTAGCTTTTTCTAACAAGCGTTGGTTACATTTCTTTATGTTATTCGTACCGGTAA 26924 Query 180010 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 180069 || |||| || || || |||| || ||||||| || | || | | || |||| Sbjct 26923 CTGGCTTATGAACTTCTGCTTTTGGGATGGTTGGTCTGGCCTTAAATTTAAGGGCATACG 26864 Query 180070 ATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCA 180129 |||| || ||| ||| | ||||||| |||||||| || || || || || || |||| Sbjct 26863 ATTTTGTGTCTCAAGAGTTACGAGCAGCCGAAGATCCTGAATTCGAAACGTTTTATACCA 26804 Query 180130 AGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGC--ACCAGTTGATCAACCACA 180187 | || || | || ||||||||| | ||||| || |||| ||| || ||||| || Sbjct 26803 AAAATATATTGCTTAATGAAGGAATCCGTGCTTGAATGGCTATGCAG--GACCAACCTCA 26746 Query 180188 TGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 ||| ||| | |||||||| |||||| | || | || ||||| Sbjct 26745 TGAAAATTTCATTTTCCCAGAGGAAGTTTTACCTCGCGGAAATGC 26701 >seq5591 Length=63835 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18755 GGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAG 18814 |||| |||||||||||||||||||||||| ||||||||||| ||| | || |||||| || Sbjct 57388 GGGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGCCGCGGGTTCGAG 57447 Query 18815 TCCCATCAATCCCG 18828 |||| ||| ||||| Sbjct 57448 TCCCGTCACTCCCG 57461 >seq1811 Length=4487 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 18754 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18813 ||||| ||||||||||||||||||||||| ||||||||||| || | || |||||||| Sbjct 4436 TGGGGGTGTAGCTCAGTTGGTTAGAGCGCTGGCCTGTCACGCCAGAGGCCGCGGGTTCAA 4377 Query 18814 GTCCCATCAATCCCG 18828 ||||| ||| ||||| Sbjct 4376 GTCCCGTCACTCCCG 4362 >seq71784 Length=19437 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 156949 TGCGGGTGTAGCTCAGT-GGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAG 157007 |||||| |||||||||| ||||||||||||| |||||| |||||||||| |||||| | Sbjct 13451 TGCGGGAGTAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGTCGCCGGTTCGAA 13510 Query 157008 TCCGATCTCCCGCT 157021 ||| ||||||||| Sbjct 13511 CCCGGTCTCCCGCT 13524 >seq29682 Length=14424 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 154342 TGGCGGAATTGGTAGACGCGCCAGGTTTAGGTTCTGGTGTCTTATGACGTGGAGGTTCAA 154401 |||||||||||||||||||||||||||||||| |||||| ||| | ||||| |||||| Sbjct 9709 TGGCGGAATTGGTAGACGCGCCAGGTTTAGGTCCTGGTGGCTTCGGCCGTGGGAGTTCAA 9650 Query 154402 GTC 154404 ||| Sbjct 9649 GTC 9647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604898405647200