Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_027125.1 Length=47142 Score E Sequences producing significant alignments: (Bits) Value seq41982 250 7e-62 >seq41982 Length=52664 Score = 250 bits (276), Expect = 7e-62 Identities = 821/1265 (65%), Gaps = 16/1265 (1%) Strand=Plus/Minus Query 35374 GTTTATGGTTCACAAGCTAATCAAGAAAAAGAAAAGTTATTAATTGATTTTAAACATGGC 35433 || ||||||||||| | ||| || |||| ||| ||||| || ||| |||| Sbjct 48906 GTCTATGGTTCACAGGAAAATGTGACCAAGGAAAGGTTGTTAATGGACTTTGCCGATGGT 48847 Query 35434 CAGTATCAAATTTT---AAGTACAAAACCAAAAATAGCAGGATCTGGATGTAATTTTCAG 35490 | || ||||| || ||||| |||||| ||||| || || || ||||| ||| Sbjct 48846 TATTACCAAATATTGGCAAGTA---AACCAATCATAGCCGGTCAGGGGTGCAATTTCCAG 48790 Query 35491 CACGTTTGTAATAATATGATATTTGTTGGTATTGATTATAAATTCAATGATTTTATACAA 35550 ||| ||| || || || ||||| ||||| |||||||||||||| || || Sbjct 48789 AGACATTGCCATACGGCCATCTTCGTAGGTATCGATTACAAATTCAATGATTTCATCCAG 48730 Query 35551 TCAGTACATAGACTTTACAGGTTTAAACAAGAAAAAGAAGTAAATGTTTATGTTATTTTC 35610 || |||| || | | ||||| || || |||| || || | | | || | Sbjct 48729 TCCATACACAGGATCCATCGGTTTGGCCAGGATCAAGAGGTCGATATCCACATAATCTAT 48670 Query 35611 ACAAACAATGAAAGAGAGGTTTTGAAA--ACTTTAAAAGATAAATGGCGCAAACATATTG 35668 || | || ||||| || || | ||| ||| | || || |||||| ||| | | Sbjct 48669 ACCCAGAACGAAAGGGAAGTGCTCAAAGTACTGTTT--GAAAAGTGGCGCCGTCATGTGG 48612 Query 35669 AACTTCAAACCGAAATGATAAATTTAGTTCGTGAATATGGTTTAAACACTAATAAAATAA 35728 |||| || || |||||||| ||| | || ||||||||||| || ||||| | ||||||| Sbjct 48611 AACTGCAGACTGAAATGATCAATCTGGTCCGTGAATATGGATTGAACACCGAAAAAATAA 48552 Query 35729 CCGCAGATATGAAAAGACAAATATTTaaaaaaaGGAGAGAATCTAAAATAGGTGGCGCAA 35788 | | ||||||||||||||| |||| ||| | | | | || || | | || Sbjct 48551 CATCGGATATGAAAAGACAACTATTCAAAGACCGCCGGTCCGCGGTCATCGGAGATGTAA 48492 Query 35789 CTGTTTATAATGAAGATACTGTAGTTATTCATAATGAAATGCCAGATAATTACACCGACA 35848 || |||||||| ||||| | |||||| | |||||| | || | ||| | | Sbjct 48491 AAGTCTATAATGAGGATACCACTATCATTCATCAGGAAATGGAATCCAACTCCACTGGAA 48432 Query 35849 TGATTTTAACATCTATTCCTTTTGGGGATCATTACGAATATTCAGATAATTATAATGATT 35908 ||||||||| || ||||||| || |||||||| || ||| || |||||||| |||| Sbjct 48431 TGATTTTAAGCTCATTTCCTTTCGGTGATCATTATGAGTATAGCGACAATTATAACGATT 48372 Query 35909 TCGGCCACAATCATGGTAATGATGAATTCTTTAAACAAATGGATTATTTAACGCCTAATT 35968 |||||||| ||| || | | |||| ||| ||||| | || ||||| || || ||| Sbjct 48371 ATGGCCACAACCATACAAACGTTCAATTTTTTGAACAACTCGACTATTTGACCCCAAATC 48312 Query 35969 TATTGAGAACTTTAAAACCTGGTAAAATAGCAGCTATTCATGTTAAAGATAGGATTCGTT 36028 | | || || ||| || || | || || | || || |||| || | ||| | | Sbjct 48311 TTTATAGGACGTTACGGCCCGGGAGGATTGCGGACATACACATTAAGGACCGTATTAGAT 48252 Query 36029 ACAGTTATCAAAACGGAACTTCATTTACTACTATCGACGATTTTAGCGGAAAAACAGTAG 36088 | |||||| ||||| || || || || || || ||||| | | | | | Sbjct 48251 ATTCTTATCAGAACGGTACCAGTTTCACGACCATAGATGATTTCTGTGCCGACATATCCC 48192 Query 36089 CTCATTTTGTAAAACACGGATTTTATTTAGTAGGTAAAATTACAGTAACTACTGATGTGG 36148 ||||| ||| ||||| |||| || || || ||||| || || || |||||||| | Sbjct 48191 ACCATTTCCGAAAGCACGGGTTTTTCTTGGTGGGCAAAATAACCGTGACAACTGATGTTG 48132 Query 36149 TTCGTGAAAATAATCAAACTTACCGCTTAGGTTGGTCCGAACAATGTAAAGACGCTACTA 36208 | || || || ||||| || || | | ||| ||||| | || || | || | Sbjct 48131 TGCGCGAGAACAATCAGACCTATAGACTCACATGGGGAGAACAGCGCAAGGATGGCACCA 48072 Query 36209 AAATGGGAGTTGGTTTACCTGAATACATTTTATTATTTAGaaaaaaaCCATCCGAAAGCA 36268 ||||||| || || | || || || | | | || |||||| ||| | || | Sbjct 48071 AAATGGGGGTAGGGCTTCCAGAGTATGTATATCTGTTCAGAAAACCCCCAACGGATTCAA 48012 Query 36269 ATAACGCTTATGCAGATGAGCCATGTGCTAAAACAAA-AGAACAATATTCGATTGATAGA 36327 | || || || || ||||| || ||| ||||| | ||| | || | ||||| Sbjct 48011 AAAATGCGTACGCCGATGATCCG-GTGGTAAAAAGGATAGATGACTAC-CTATTGAGCCT 47954 Query 36328 T-GGCAACTAGATGCTCACGCTTATTGGAAATCTTCAGGTGATCGTTTTATGAGTAGTGA 36386 | ||||| | ||||| || || ||||||||||| || || || || ||| | || || Sbjct 47953 TTGGCAATTGGATGCGCATGCCTATTGGAAATCCTCGGGCGACCGGTTTTTAAGCTACGA 47894 Query 36387 AGAATTGAC-TATATCAGAAATGAAATCAATTTTCAATAGATGGAGAGAATTTGATAAAA 36445 ||| || | | | || | |||||| | ||||| |||| ||||| || | Sbjct 47893 GGAACTGGCATCCACCA-ATATGAAAAGCGTGTTCAACCAGTGGAAGGAATTCGACCGTA 47835 Query 36446 ACAACATTTATAATTTTCAAGAGCATTTAAAGATTTGTAGTGATTTAGAAAATGCAGGTA 36505 | |||||| | |||||| || |||||| | | ||| ||| | |||| | ||| | Sbjct 47834 AGGCCATTTACAGTTTTCAGGAACATTTACGGGTATGTGAGGATCTGGAAAGTATAGGCA 47775 Query 36506 AATTAAGTCGTTTGTTTATGACAATTCCGCCAACTTCTAATAATGATCTTGTTTGGACTG 36565 || | |||| ||||| || || || || |||||| | || ||||| | Sbjct 47774 AACTTTCCAAACTGTTCATGACCATACCCCCTACGAGCGGCAATGATATGGTATGGACCG 47715 Query 36566 ATGTTAATCGTATGAATACTTTAAACGCTAACCAATCAAACAGGAAAAAAGAAAAGCATA 36625 || | || |||||||| || | || | ||||| | || | ||||| |||||||||| Sbjct 47714 ATATCAACCGTATGAACACCCTTAATACAAACCAGACCAATCGAAAAAAGGAAAAGCATA 47655 Query 36626 TTTGT 36630 | ||| Sbjct 47654 TCTGT 47650 Score = 150 bits (166), Expect = 5e-32 Identities = 388/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 34501 TTCGCTAGTTTTGGTTTAGGAAAAACAATAATGCAATTAGAAATCGCTAAAAATGTAAT- 34559 || ||| ||| || | || ||||| |||||||| | ||||| || | | || || Sbjct 49776 TTTGCTTCTTTCGGCCTTGGCAAAACGGTAATGCAACTGGAAATAGCGATGCAGGTCATC 49717 Query 34560 GAAAATAACAAATAAGCCTTTTTTAATTTGTATGCCTTTGGGTGTAGTTGGAGAGTTTAA 34619 ||| | | | || || |||||||| || | ||||| |||||||| | || ||||| || Sbjct 49716 GAATACACCCAAAAA-CCTTTTTTGATCGGGATGCCCTTGGGTGTTATCGGTGAGTTCAA 49658 Query 34620 AGATGATTTAGCGTTTTTATATCCTGAAATGATCATAAAATATATAACTGAATCTGATAA 34679 | || || | || | | | | || || ||||||||||||| | || Sbjct 49657 AAGGGACAACGCCATGTTGGGTACCGGATTGGATATCGAATATATAACTGATACGGACGC 49598 Query 34680 TTTAGATTATTCAATAGAAGAAAACGTTATATATGTTACCAATTATGAACGTATAAGGAA 34739 ||||| | | || ||| | |||||| |||||||||||||| || | || Sbjct 49597 CATAGATGAATACGCCCAAAAAATC----TATATG--ACCAATTATGAACGGATCCGCAA 49544 Query 34740 AGGGGATGTTAGAGCTGATTATTTTGGTGGTGTTTCATTTGACGAAGCTTCTATTTTAAG 34799 ||| ||| | || | || || || ||||| |||||||| || || ||||| || Sbjct 49543 AGGCGATATCGATGCATCAAAATTCGGCGGGGTTTCTTTTGACGAGGCATCCATTTTGAG 49484 Query 34800 AAATCTAAAAACAGAAACAACCAATTATGTTTTAAATCATTTTAGAGGTGTTAACTACCG 34859 ||| ||||| || || ||||| ||||||||||| | | || || || ||| || Sbjct 49483 AAACCTAAAGACCGAGACAACAAATTATGTTTTGGAGTACTTCGGAAAGGTACCCTATCG 49424 Query 34860 ATTTGTTGCTACAGCAACCCCAACACCTAATGATTTTATAGAAATTCTTAATTATGCAGA 34919 ||| || || || || || || || || ||| || || || || ||||| |||| Sbjct 49423 ATTCGTGTTCACGGCCACACCTACCCCGAACAATTACATTGAGATCCTGAATTACGCAGT 49364 Query 34920 TTATTTAGGTGTTATTGATAGAGGTCACGCATTAACTATATTTTTTCAAAGAGATTCCAA 34979 || | ||||| | || ||||| || || | || |||||| ||||| || | Sbjct 49363 TTTCCTTGGTGTGGTGGACAGAGGCCATGCGCTTACCCGATTTTTCCAAAGGGACAGTAC 49304 Query 34980 AAAAGCAGGTCATTTGACACTTTACGAGAATAAAAAAGAGGAGTTTTGGAAATGGGTATC 35039 || || || | |||| | || || || ||||| || || || ||||||||||| Sbjct 49303 CAAGGCCGGAAAACTGACCTTATATGAAAACAAAAAGGAAGAATTCTGGAAATGGGTGAG 49244 Query 35040 TACTTGGGCTGTATTTATTGATAAGCCATCTGATTTAGGGTATAATG 35086 ||||||||| ||||| || | || ||||| ||||| ||| || ||| Sbjct 49243 TACTTGGGCCGTATTCATAAACAAACCATCCGATTTGGGGCATGATG 49197 Score = 111 bits (122), Expect = 5e-20 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 36650 TAAAAAGATTAATAGAGCGTTTCACAATGGAGGGAGATTTAATAGATGATCCATTTGGCG 36709 || ||||||| || | || || || | |||| || ||| | || ||||| ||||| | Sbjct 46646 TAGAAAGATTGATCAACCGGTTTACGAACAAGGGCGACTTAGTGGACGATCCTTTTGGGG 46587 Query 36710 GTTTATTTACTACTCCTTACAATGCTATTGAAATGAATAGAAAGGCTGTATCTTGTGAAT 36769 | || ||| | || |||||||| | |||||||| | ||||| |||| || | Sbjct 46586 GATTGTTTTCCACGCCTTACAAGTGTCTTGAAATGGGACGCAAGGCCATATCCGTAGAGT 46527 Query 36770 TAAATCCAGAGTATTACGATGATGGATTGTTTTATTTGAAATCTATTGAATATAAAATAA 36829 | ||||| || ||||||||||| || | || |||||||| || || ||||||||||| | Sbjct 46526 TGAATCCGGATTATTACGATGACGGTCTTTTCTATTTGAAGTCCATGGAATATAAAATCA 46467 Query 36830 ATGTTCCAACTTTATTTGATTTGTTA 36855 |||| || || | |||||| || || Sbjct 46466 ATGTGCCCACACTTTTTGATATGATA 46441 Score = 93.3 bits (102), Expect = 1e-14 Identities = 236/354 (67%), Gaps = 14/354 (4%) Strand=Plus/Minus Query 16055 CAATTTCGACAGCAGCCGGTTTAGACCGTAGATCAAGAGGAAGTGGTGTAAAACTCAAAA 16114 |||| || ||||||| || |||| |||| |||| | || ||| || |||| Sbjct 31801 CAATATCAACAGCAGTAGGACTAGAGCGTAAATCACGTACCGCCGG-GTACAAGCTAAAA 31743 Query 16115 AAGGG-TTTTTCAATAATGATACTCCAAATTTACCTCAAAAGATTGCTATTTTTGGCGAA 16173 ||||| ||||| | |||| || || || | || ||| ||||| ||||| |||||| Sbjct 31742 AAGGGATTTTTTAGTAATAGCACACCGAACCTTCCCCAACGCATTGCCATTTTGGGCGAA 31683 Query 16174 GCAAATACAGCTAATCAATCAGGATTAACAGTAACACC-----AGTTGAGGTAACAAGTG 16228 || ||| || || ||| || || ||||| | ||||| | ||| | Sbjct 31682 GCCAATGATGCGAACCAAGTAGCGTTGG-----ACACCGATGGATTTGAGATTACATCGG 31628 Query 16229 CTAATGAAGCAGCTCAATTATTTGGATATGGCTCACCAATTCACTCAATAATGAGAATTT 16288 | || || || ||| || || ||| ||||| ||||| || ||| | || |||| Sbjct 31627 CAAAGGAGGCTGCTGAAAGATATGGTTATGGAAGTCCAATGCATCAAATGTTCAGGATTT 31568 Query 16289 TAAGACCTGTTAAC-GGTGATGGTGTGGGTGGAATTCCTACTATTGTTTTTCCTCAAATT 16347 | ||||| | || | ||||||||||| ||||| ||||| || | ||||| ||| | Sbjct 31567 TGAGACC-GATATCAGGTGATGGTGTAGGTGGGATTCCCACCTGGGCATTTCCACAAGCT 31509 Query 16348 ACAGATGGCGGGGCAACTGCAACATCTAGAACTTGGACAGTTACGGGAACGGCA 16401 | ||||| ||||| |||| ||| | | ||||| ||||||||||||||| Sbjct 31508 TCGGATGGTGGGGCTACTGTAACCGTCAATGCGTGGACTGTTACGGGAACGGCA 31455 Score = 86.0 bits (94), Expect = 2e-12 Identities = 170/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 21520 ACGATAACTGAGCCCGTATTAGGTGTTAATAATATTGTTACAGTTACAGAAGTTATTGAA 21579 ||||| || |||||||| ||||||| || | | || | ||||| | |||| | ||| Sbjct 26389 ACGATCACGGAGCCCGTCATAGGTGTAGATCAGGTGGTAATTGTTACTGCAGTTTTAGAA 26330 Query 21580 AAGCCTAGAGCAAGTGAGGATATAGATGTTTACAGGCAAAATATAATTGACTCTATACAA 21639 | || | || ||| | |||| || | || || | ||| ||||||| Sbjct 26329 ACACCAACGGCTTTCGAGAGCACCGATGCGTATCGACAGGCCATTTTGGACGCTATACAG 26270 Query 21640 TTAGAGCCGCAAGGGGGTAGTAAAACAGATTATAGAGAATGGGCAGCAGATGCACAAGGA 21699 || ||||||||||| ||| ||||| |||||||| ||||| || ||||| ||||| Sbjct 26269 TTGGAGCCGCAAGGTGGTGCAAAAACCGATTATAGGTTGTGGGCGGCCGATGCCCAAGGG 26210 Query 21700 GTAAGAAAAGTTTACCCTTATGTTAGAAATGATGA--TGCGGGTATTGTTGATGTTTATG 21757 ||||||||| | || || ||||| ||||| || |||||| | || | | | || Sbjct 26209 GTAAGAAAAATATATCCCTATGT--GAAATCGGGATCTGCGGGAACCGTACAAATATTTG 26152 Query 21758 TAGAGGCTAC 21767 | |||||||| Sbjct 26151 TGGAGGCTAC 26142 Score = 84.2 bits (92), Expect = 7e-12 Identities = 192/285 (67%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 8633 TACAATAGTAATTATTCTGCTTCAAGGGCTGCTATTAATACTTTTGATTATGT-GTGTAC 8691 || || ||||||||| ||||||| |||| || || | | | |||| | || || Sbjct 17634 TATAACAGTAATTATAGTGCTTCACGGGCAGCCATCGGTGCATGGGATTTCATAGTCAAC 17575 Query 8692 TTTAGCGCGTGAAAAATTTGTAGAGGAATTTTATAAGCCGATTTATCAATTATACTTTGA 8751 || | ||||||||||| | || ||||||| ||||| | ||| || ||| || | Sbjct 17574 ATTTAC-CGTGAAAAATTCGCCGAAAAATTTTACAAGCCATTCTATGAACTATGGCTTCA 17516 Query 8752 GATTGAAGTTTTAAAGGGGAAAGTACCCGCTAATGGTTATTTAGTTGCACTTTCTACCAA 8811 |||| | |||||||| || || || ||||| || | || || | || Sbjct 17515 TTCTGAAATATTAAAGGGTAAGATAAAGGCCAATGGATACCT-----CAAAAACT-CGAA 17462 Query 8812 TGATTTTATGGTTACGGAAGCTTACAGTAATTGTAGATTTATAGGTAAATCAATGCCACA 8871 |||||||||| || ||||| || | ||||| | |||| ||||||||| Sbjct 17461 CAATTTTATGGTGGTCGAGGCTTATGCCAAATCCCGATTTGTGGGTAGTAAAATGCCACA 17402 Query 8872 TATTGACCCGCTAAAAGAAGTTAAGGCAATAGCCGAAATGTTAGC 8916 ||||||||| | || |||||||||||||| |||||||| |||| Sbjct 17401 TATTGACCCTGTTAAGGAAGTTAAGGCAATTACCGAAATGGTAGC 17357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150470231941120