Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq13327 461 9e-125 seq303 399 3e-106 seq5591 93.3 5e-14 seq1811 91.5 2e-13 seq71784 86.0 8e-12 >seq13327 Length=3816 Score = 461 bits (510), Expect = 9e-125 Identities = 638/892 (72%), Gaps = 1/892 (0%) Strand=Plus/Minus Query 178947 TATC-TGTTTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTG 179005 |||| |||||||| | |||||| ||||| ||||| || || |||||||| || || |||| Sbjct 2740 TATCGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTG 2681 Query 179006 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAA 179065 | || || | || || || | || ||||| || || ||||| || || || || || | Sbjct 2680 AGCCAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGA 2621 Query 179066 GTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGT 179125 ||||||| || |||||| | || || || | | || || || | | || || | Sbjct 2620 GTTCAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAAT 2561 Query 179126 GGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATG 179185 | |||||||||| || |||| |||| | || || | || ||| | ||||| | Sbjct 2560 GATTGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCAT 2501 Query 179186 CCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTG 179245 | ||| | || |||||||| ||| | ||||||| |||| |||||||| || || | | Sbjct 2500 CATATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCG 2441 Query 179246 TTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTC 179305 | || | |||||||||||| || || || || ||||| || || || || |||| | Sbjct 2440 TAGCTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGAC 2381 Query 179306 AAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 179365 |||| ||||| || |||| |||||||| || || ||||| || || |||| |||||| | Sbjct 2380 AAGGATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAG 2321 Query 179366 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 179425 ||||||| ||||| || || ||| | |||||||| ||||| ||| || || || || | Sbjct 2320 TATTCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAG 2261 Query 179426 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC 179485 |||| || |||||| | || ||||||||| ||| | | ||||| || | | || Sbjct 2260 TATTTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTT 2201 Query 179486 GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGA 179545 | || | ||| || |||| || ||||| ||||| |||||||| ||| | || | Sbjct 2200 CTATGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAA 2141 Query 179546 CCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCT 179605 | ||||| ||||| || || || || |||||||| ||| | ||||| |||| ||| | Sbjct 2140 CATATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTT 2081 Query 179606 TTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGT 179665 |||| |||||||| ||||| |||||||||||||| || ||||| || || ||||| | Sbjct 2080 TTAATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGAT 2021 Query 179666 TCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGT 179725 | || || | || | || ||||| ||||| || || || ||||| |||||||| | Sbjct 2020 TAACAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAAT 1961 Query 179726 CCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAG 179785 | ||| |||| | |||||||||| || | || || || | || || |||||| Sbjct 1960 CAATCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAA 1901 Query 179786 GTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 179837 | | || |||||||| ||||||||||||||||| ||||| ||||| || || Sbjct 1900 ATCTAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGA 1849 >seq303 Length=42796 Score = 399 bits (442), Expect = 3e-106 Identities = 670/964 (70%), Gaps = 4/964 (0%) Strand=Plus/Minus Query 180057 TTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGC 180116 ||| ||||||| ||||| || ||| || | ||| |||| || |||||| | || | || Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 180117 GGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCC 180176 || || || || || |||| || || |||||||| | || ||||| || ||| | Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 180177 TATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGT 180236 ||||| |||||| ||| ||| | || || ||||| || ||||| ||| | ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 180237 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAA 180296 || || ||| | ||| ||| ||||| || ||||||| ||| || |||| ||| Sbjct 27494 CACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAA 27435 Query 180297 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATG 180356 |||| || | || ||||| | || | || || |||| | | |||||| Sbjct 27434 GTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTTTGT 27375 Query 180357 CTACGCCAGTTTGAACTGGCACGTCTTATTGGTA-TCCGTCCTTACAATGCTATTGCATT 180415 || | || |||||| | ||| | ||| || | ||||| || ||||| ||||| || Sbjct 27374 TTAAGACAATTTGAAATTGCAAGG-TTAGTGCAGGTTCGTCCATATAATGCAATTGCTTT 27316 Query 180416 CTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAG 180475 | | ||||| || || || ||||| || ||| | || || || | ||||| | || Sbjct 27315 CACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGAG 27256 Query 180476 TTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCA 180535 ||| || ||||| || |||||| || || || || |||||||| |||| || |||| Sbjct 27255 TTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTCA 27196 Query 180536 GGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 180595 || || || ||||| || || || || |||||||||||||| || || ||||| |||| Sbjct 27195 AGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAGG 27136 Query 180596 TGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGG 180655 || || || | || || |||||||| | ||||| | || || | ||| ||||||| Sbjct 27135 AGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGATGG 27076 Query 180656 AGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTAT 180715 | |||||||| || ||| |||||||| || || ||||| || || Sbjct 27075 TGTGTCGTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCAAT 27016 Query 180716 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTG 180775 ||| || ||||| || || || || ||||| || || | || |||||||||||||| || Sbjct 27015 GGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGTTG 26956 Query 180776 GCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCAT 180835 | | ||||| || ||||| || || || || | || |||| || || || |||| || Sbjct 26955 GTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGGAT 26896 Query 180836 TATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGC 180895 ||||||| || | || | | || |||||||| ||| ||||||| | ||||||| Sbjct 26895 GGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGCAGC 26836 Query 180896 AGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACG 180955 ||||||||||| ||||| ||||| || ||||| || || | | ||||||||| | || Sbjct 26835 CGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAATCCG 26776 Query 180956 TGCATGGTTGGCACCTGC-CGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTC 181014 ||| || |||| ||| || ||||| || ||||| ||||| ||||| || |||||| Sbjct 26775 TGCTTGAATGGC-TATGCAGGACCAACCTCATGAAAATTTCATTTTCCCAGAGGAAGTTT 26717 Query 181015 TACC 181018 |||| Sbjct 26716 TACC 26713 >seq5591 Length=63835 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18908 GGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAG 18967 |||| |||||||||||||||||||||||| ||||||||||| ||| | || |||||| || Sbjct 57388 GGGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGCCGCGGGTTCGAG 57447 Query 18968 TCCCATCAATCCCG 18981 |||| ||| ||||| Sbjct 57448 TCCCGTCACTCCCG 57461 >seq1811 Length=4487 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 18907 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18966 ||||| ||||||||||||||||||||||| ||||||||||| || | || |||||||| Sbjct 4436 TGGGGGTGTAGCTCAGTTGGTTAGAGCGCTGGCCTGTCACGCCAGAGGCCGCGGGTTCAA 4377 Query 18967 GTCCCATCAATCCCG 18981 ||||| ||| ||||| Sbjct 4376 GTCCCGTCACTCCCG 4362 >seq71784 Length=19437 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 155855 TGCGGGTGTAGCTCAGT-GGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAG 155913 |||||| |||||||||| ||||||||||||| |||||| |||||||||| |||||| | Sbjct 13451 TGCGGGAGTAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGTCGCCGGTTCGAA 13510 Query 155914 TCCGATCTCCCGCT 155927 ||| ||||||||| Sbjct 13511 CCCGGTCTCCCGCT 13524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609210484387200