Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10895 176 6e-39 seq34284 113 6e-20 seq83140 86.0 8e-12 seq37582 82.4 1e-10 >seq10895 Length=16309 Score = 176 bits (194), Expect = 6e-39 Identities = 723/1125 (64%), Gaps = 35/1125 (3%) Strand=Plus/Minus Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034 |||| ||||||||| || |||| |||||||| ||||| ||| | | Sbjct 11606 TACAAGGTTTCAAAAATCTCTTGGTTCAATTCCTTGGCCTCATCACTGGTAAAGGGCAAA 11547 Query 111035 CGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGC 111094 || ||| |||||| ||| || || ||||| || |||||||| || || || || ||| Sbjct 11546 CGCAACATAATAAAGGTATCTGCCAGTCCTTGGACTCCCAAACCTATTGGCCTATGGCGC 11487 Query 111095 ATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 111154 ||||| || ||| ||| || ||||| || |||| || |||||||| | || || Sbjct 11486 ATATTGGAATTTTCCGCTTCCTTTACGGGGTAGTAATTCCTATCAATGACCCTATTAAGG 11427 Query 111155 TTTTTGGTAACAATCTTTGTGAT-TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC 111213 || ||||| || ||||| | || | || | || | |||||| ||| | | Sbjct 11426 TTCTTGGTCACCCGTTTTGTAACCTTGAACAATTCCTTG-TGATCAAATTTGCC---CCC 11371 Query 111214 TTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTT 111273 || | ||| || | ||||| || || || ||||| || ||||| || ||||| Sbjct 11370 TTTA---ACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGG 11314 Query 111274 ATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTT 111333 || || || || || || ||||| | |||||| || || ||||| ||||| Sbjct 11313 GGAGGTATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTT 11254 Query 111334 TTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 111393 || || || || ||| ||||||||| || ||||| |||||||| |||||||| | Sbjct 11253 CTGATTGCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAAT 11194 Query 111394 CTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTT----GGCCC 111449 ||| |||| | || | ||| | ||| ||| ||| |||| | ||| Sbjct 11193 CTGGGATTCCAATATTTTTTCCCATAAATCCCTGGCCTTTAC-----CGTTTTGCGACCC 11139 Query 111450 GTC-CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG 111508 | |||| ||||| || || || || |||||| ||||||| | | | | Sbjct 11138 TTATCCTCTGCCTCATATTTCAAATATAGTTTTTCAAATTCCTCACTGT--GATTTGAAA 11081 Query 111509 AGA--CCTGG---TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCC 111563 | | ||||| | | ||| || || | | | ||| | || |||| || | Sbjct 11080 ACAATCCTGGACATTCATTG---GGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGC 11024 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTT 111623 |||||||||| | ||||||||||||| || | || ||||| | || |||| Sbjct 11023 GCTTCATGAACAAATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTT 10964 Query 111624 CGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 111682 | | || ||||| || | || || | || || | |||||||| ||||| ||||| Sbjct 10963 CCTTTCCGTGGTTCT-TCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCT 10905 Query 111683 AGATAGACTGCGATAGATCCCTTTCGACGCCCAGCT---TGATTTACATAGCGCGCTGTG 111739 | ||| | || | | ||| ||||| ||| || |||| || ||||| || ||| Sbjct 10904 ACATAAATGGCAAAACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTG 10845 Query 111740 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATA 111799 | |||||||| | ||||| || | |||||||| || |||||| || || ||| Sbjct 10844 TCATTAAATACCCTTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATA 10785 Query 111800 CGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAG 111859 ||| | || | |||| || ||| | || || ||||| || | | ||| Sbjct 10784 TATGATCCCGTAGCCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGATTGGGAG 10725 Query 111860 ATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCG 111919 |||| ||| || | | | || | || ||||| | ||| ||| ||||| |||| Sbjct 10724 ATTTTCGCGGTCTGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCC 10665 Query 111920 ATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTT 111979 | |||||||| |||||||||||| | || || || | ||||||||||| |||||| Sbjct 10664 AATAGGAAGCAGGAGGACATCTGCGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTT 10605 Query 111980 GCGTGAATGAACATA-CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 112038 || || |||| ||| || |||||| || || || || | | |||| || || || Sbjct 10604 GCATGGGTGAA-ATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATATC 10546 Query 112039 TTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | |||||| || | || || ||||| ||||| | ||| || Sbjct 10545 ATTTAAGTGGATTCCAACCGCAACGCGCATCAACATATGCTGGGG 10501 Score = 84.2 bits (92), Expect = 3e-11 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 110353 CGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATG 110412 |||||| | || | |||||||||||| || || | || |||||| || || | ||| Sbjct 12237 CGCCTTGGTTCTCAAATAGTACATCCCTGTTTTTAAACCGCTTTTCCAAGCATAAAAATG 12178 Query 110413 CATAGAAGAGAGCTTGGACATCGTTGG-ACTTTCCATGAAGAGGTTCATACTTTGACTTT 110471 |||||| | | ||||| || ||||| | ||||||| || | |||| ||| || | Sbjct 12177 CATAGAGGTCAATTTGGA-ATAGTTGGCATTTTCCATAAACAAATTCAACGATTGGCTCT 12119 Query 110472 GGTCAATGAAGCGCCCCCGTTGTGCCGC-CATATCAATGACATCCTTCATCTTAATTTCC 110530 |||||||||| ||| || || | || ||||||||| | ||| ||||| | | ||| Sbjct 12118 GGTCAATGAAATACCCTCGCTG-ACGGCTCATATCAATAATATCTTTCATACTGAGCTCC 12060 Query 110531 CAAACTGTGCGATAGAGATTCTTGATATCATCTGGGA-TATCTGAGATATTCTGGATGGA 110589 ||||| || ||| | | ||| ||| ||| || | ||| | | || | ||| ||||| Sbjct 12059 CAAACCGTTTTATACAATTCCTTAATACTATCGGGAATTATATCA-ATGTGCTGAATGGA 12001 Query 110590 ACC 110592 || Sbjct 12000 GCC 11998 >seq34284 Length=3714 Score = 113 bits (124), Expect = 6e-20 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 26251 ATGCCCCAGAAAGTTTGGTATGCGCCCAACAAATTTGAATCATATGGGGAGGAAGAAATT 26310 ||||| ||||| ||||||| ||||| ||||| |||||| | |||||||||||||| || Sbjct 2440 ATGCCGAAGAAAATTTGGTACGCGCCAAACAAGTTTGAAGCCTATGGGGAGGAAGAGATA 2381 Query 26311 AAAGCCGTTGAGGCTTGCCTTCGCGATGGCTGGCTCGCTGGCTTTGGTGATCGCACTGTG 26370 ||||| || ||| | |||||||| ||||||||||| || | ||| ||| || | | Sbjct 2380 AAAGCTGTGGAGTCCTGCCTTCGAGATGGCTGGCT---TGCCCCCGGTCCTCGAACGGCG 2324 Query 26371 GAGTTTGAGAAGA 26383 ||||||||| ||| Sbjct 2323 GAGTTTGAGGAGA 2311 >seq83140 Length=1468 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 ||||||||| | |||||| || || | |||||| ||| || ||||| |||| ||| Sbjct 988 TGTGTACTCGACAATTTCAGTGCAGAGGTTGGATGACTTGATGCACCCCAGGTTCTGTTG 1047 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||||||||| || ||||| ||||||||||| || || ||||| |||| Sbjct 1048 GTTGGACTTTCTGTTGCACGCGTCTTTGTACAGCATGTAGGGGGTACCGGTCTCAATCTG 1107 >seq37582 Length=6673 Score = 82.4 bits (90), Expect = 1e-10 Identities = 217/324 (67%), Gaps = 13/324 (4%) Strand=Plus/Minus Query 11579 TCTCTCTCATCATTTGCTG--GCATACCACCAGCACTGCGTTGCTTGC---CCACCGCAT 11633 |||||||| |||||| || ||| ||| || | ||| | ||| | |||| |||| Sbjct 2668 TCTCTCTCGTCATTTCCTCCTGCAAACCCCC--CTCTGTTTCTCTTCCTCCCCACTGCAT 2611 Query 11634 CAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGC 11693 ||||||||||||| |||| ||| | ||| | || ||||| || ||||||||| | Sbjct 2610 CAATCTCATCAATAAAGATAATCGACGGTGCGTGTTTACGGGCTTGTTGAAAGAGATCAC 2551 Query 11694 GAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGA 11753 | || || || |||||| || ||||| | ||| || || | | | || || || | Sbjct 2550 GCACTCTGGAGGGACCCACTCCGACAAAGACCTCGACGAAATCAGATCCCGA-CATTGAA 2492 Query 11754 T-GAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCT 11812 | ||| ||||| || || || || | || || || |||||||| ||||| || Sbjct 2491 TAGAACGGGACTGATGCCTCGCCAGCCACAGCCTTTGCCAGAAGGGTCTTCCCCGTCCCG 2432 Query 11813 GGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATATCTCT 11870 || ||| | || | || ||| |||| ||||||||| | ||| |||| ||| Sbjct 2431 GGGGGACCAACAAGCAACGCACCTTTGGGGCACTTGGCACCCAAATTC--TCATATTTCT 2374 Query 11871 CGGGTTGCTTGAGAAAATCCACAA 11894 || | || ||||| ||||||| Sbjct 2373 GCGGATCTTTCAGAAAGTCCACAA 2350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626880424824000