Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq34284 113 6e-20 seq10895 109 7e-19 >seq34284 Length=3714 Score = 113 bits (124), Expect = 6e-20 Identities = 135/183 (74%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 31629 ATGCCCAAGAAAGTGTGGTATGCGCCCAACAAATTTGAATCATATGGGGAGGAAGAAATT 31688 ||||| |||||| | ||||| ||||| ||||| |||||| | |||||||||||||| || Sbjct 2440 ATGCCGAAGAAAATTTGGTACGCGCCAAACAAGTTTGAAGCCTATGGGGAGGAAGAGATA 2381 Query 31689 AAAGCCGTTGAGGCTTGCCTTCGCGATGGCTGGCTCGCTGGCTTTGGTGATCGCTCTGTG 31748 ||||| || ||| | |||||||| ||||||||||| || | ||| ||| | | | Sbjct 2380 AAAGCTGTGGAGTCCTGCCTTCGAGATGGCTGGCT---TGCCCCCGGTCCTCGAACGGCG 2324 Query 31749 GAATTTGAGAAGAGAGTGGCTGACATATTCGGAAAGAGACACGGACTCTTTGTAAACTCT 31808 || |||||| ||| || | | | |||||||||| |||| | || || || ||| Sbjct 2323 GAGTTTGAGGAGAAGGTTTCGGCTTTCTTCGGAAAGAAGTACGGTGTGTTCGTCAATTCT 2264 Query 31809 GGA 31811 ||| Sbjct 2263 GGA 2261 >seq10895 Length=16309 Score = 109 bits (120), Expect = 7e-19 Identities = 299/450 (66%), Gaps = 10/450 (2%) Strand=Plus/Minus Query 117843 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 117902 ||||||||||| || || | || ||||| ||||| | |||||| |||| ||| ||| Sbjct 12221 TAGTACATCCCTGTTTTTAAACCGCTTTTCCAAGCATAAAAATGCATAGAGGTCAATTTG 12162 Query 117903 GAGAGGGTTGG-ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 || | ||||| | ||||||| || | |||| |||| || || ||||| || Sbjct 12161 GA-ATAGTTGGCATTTTCCATAAACAAATTCAACGATTGGCTCTGGTCAATGAAATACCC 12103 Query 117962 CCGATCCGCCGC-CATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGA 118020 || | | || ||||||||| | ||| ||||| ||| ||||| || || | || | Sbjct 12102 TCGCTGA-CGGCTCATATCAATAATATCTTTCATACTGAGCTCCCAAACCGTTTTATACA 12044 Query 118021 GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCA 118080 | ||||||| ||| || || | || | || ||||| ||| || | || Sbjct 12043 ATTCCTTAATACTATCGGGAATTATATCAATGTGCTGAATGGAGCCATTGGC---GCGCA 11987 Query 118081 TGAGATCCT-TCATATCCTTTGA--CCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 118137 | | |||| | || ||| | ||| | || | ||| | ||| |||| ||||| Sbjct 11986 TCAACTCCTGTTTTAGGTTTTCATTCCAAATTCCGAGTTTTACCAAATCTTCCAAGAGAT 11927 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 118197 ||||||| || || | |||||| || | | | ||| ||| || |||| |||| Sbjct 11926 GCTTATTCACTACGATAAACTCCCCGGACAATACCCTTCTGGTATAAATGTTGGAGGTGT 11867 Query 118198 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 | |||||||| ||||| ||||| |||| ||||||| ||| || || || |||||||| | Sbjct 11866 AGGGCTCAAAACACTCGTTGTTCCCCAGTATTTGGGATGTAGACGCGGTAGGCATGGGAG 11807 Query 118258 CCATGAGAAGGCTGTTACGGAGACCCTTTT 118287 | | | ||| ||| || | ||| |||| Sbjct 11806 CGACCAACAGGGAGTTGCGCACACCATTTT 11777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617301221756400