Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10895 168 8e-37 seq83140 109 6e-19 seq34284 109 6e-19 >seq10895 Length=16309 Score = 168 bits (186), Expect = 8e-37 Identities = 1102/1752 (63%), Gaps = 68/1752 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||||| |||||||| || | || || || | || || || |||| | Sbjct 10501 CCCCAGCATATGTTGATGCGCGTTGCGGTTGGAATCCACTTAAATGATATGGACTCTGCC 10560 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 104340 | || || || || |||||| || ||| |||| || |||||||| |||||||| Sbjct 10561 ATAGAAACCTATGAGCTGATGTCAAAAAAATAT-TTCACCCATGCAACACCTACCCTCTT 10619 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| | || || || | || || |||||| |||||||| | |||| ||||| || Sbjct 10620 CAACTCCGGAACGCCCAAGCCGCAGATGTCCTCCTGCTTCCTATTGGCCATGAAGGACGA 10679 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | ||||| || | || | | | || ||| ||||||| | | || || Sbjct 10680 CAGTATCGATGGTATTTACGACACCTTGAAGCAGACCGCGAAAATCTCCCAATCTGCGGG 10739 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||| || || | ||| || |||| | || | ||| ||| || || || Sbjct 10740 GGGAATCGGACTTTCCATTCACAATGTTCGGGCTACGGGATCATATATAGCCGGTACCAA 10799 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 |||| || |||||||| | || ||||| | |||||||| | ||| || ||||| || Sbjct 10800 TGGTACTTCCAATGGTATTGTCCCTATGCTAAGGGTATTTAATGACACGGCACGCTACGT 10859 Query 104581 AAATCA---AGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 |||| || ||| ||||| ||| | | || | ||| | ||||| ||||| || Sbjct 10860 TGATCAAGGAGGCGGGAAGCGAAAAGGAAGTTTTGCCATTTATGTAGAGCCTTGGCATGC 10919 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCG 104697 |||||| | || || | || ||| ||||| || | || || ||| ||| Sbjct 10920 GGATATTTTTGACTTTTTGGAATTGAAGAAGAACCACGGAAAGGAAGAAATGCGTGCCCG 10979 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||||| |||| ||| | |||||||||||| | ||||||||| | || |||| | || Sbjct 10980 TGATCTGTTCTACGCCATGTGGATTCCAGATTTGTTCATGAAGCGCGTGGAGGCCAATGA 11039 Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCTGG--TCTCTCCGATGCCGTGGGT 104812 ||||| | | | || || ||| | | || || | | | | | | || Sbjct 11040 AGATTGGACCTTAATGTGCCC---CAATGAATGTCCAGGATTGTTTTCAAATC--ACAGT 11094 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGG 104870 ||||| |||||| || || || || |||| ||| | | || | | || |||| Sbjct 11095 GAGGAATTTGAAAAACTATATTTGAAATATGAGGCAGAGGATAAGG-GTC-GCAAAACGG 11152 Query 104871 T----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | ||||| ||| | ||| || || | | || || | ||||| || || Sbjct 11153 TAAAGGCCAG----GGATTTATGGGAAAAAATATTGGAATCCCAGATTGAGACGGGAACG 11208 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || || |||||||| || || || || | || || ||||| ||||| |||||| Sbjct 11209 CCCTATATGCTTTATAAGGATGCGGCCAATCGTAAAAGCAATCAGAAGAACTTGGGTACT 11268 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| ||||||||| ||||| || || ||||||| ||| | ||||| || Sbjct 11269 ATCCGATCTTCCAATCTTTGTACCGAGATATTGGAATATACCTCCCCCGATGAAGTAGCG 11328 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 105106 || |||||| | || || || ||||| |||| || ||| | | | ||| |||| Sbjct 11329 GTTTGTAACTTGGCCTCTATAGCTCTTCCCATGTTTGTTAA--AGGGGGCAA----ATTT 11382 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 ||| | | || | | | ||||| ||| || ||||| ||||| || || || ||| Sbjct 11383 GATCACAAGGAATTGTTCAAGGTTACAAAACGGGTGACCAAGAACCTTAATAGGGTCATT 11442 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||||| |||| |||||||| || || || || |||||| | || | ||||| Sbjct 11443 GATAGGAATTACTACCCCGTAAAGGAAGCGGAAAATTCCAATATGCGCCATAGGCCAATA 11502 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286 ||| | || || || || || || ||| || ||| | | || | ||| Sbjct 11503 GGTTTGGGAGTCCAAGGACTGGCAGATACCTTTATTATGTTGCGTTTGCCCTTTACCAGT 11562 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 || || || |||||| | || || ||||| ||| |||| | ||||| || Sbjct 11563 GATGAGGCCAAGGAATTGAACCAAGAGATTTTTGAAACCTTGTACTATGCCGCGGTTACC 11622 Query 105347 GCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 105406 || | ||| ||| | || || || | || ||||| |||| || ||| | Sbjct 11623 GCTTCTATGGAGGAGGCCAAAGTAGAGGGAGCCTACTCTTCCTTTAAGGGCTCACCAATT 11682 Query 105407 TCACAAGGGGTGCTTCAATTTGATATGTGGG-----AAGGTGAGACCAAG--CTT----- 105454 ||| ||||| ||||| | || | |||| ||| ||| ||| ||| Sbjct 11683 TCAGAAGGGAAATTTCAACATAATCTTTGGGGTATCAAG----GACGAAGAACTTTCGGG 11738 Query 105455 -CACTACGACTGGG---AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510 | | ||||||| || | |||| | ||| | | || ||| | || ||| Sbjct 11739 CCGTTGGGACTGGGAAAAATTGCGCAAGCAGGTCATAA---AAAATGGTGTGCGCAACTC 11795 Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 || | | ||||| ||||| || || || || | ||||| |||| || || || || Sbjct 11796 CCTGTTGGTCGCTCCCATGCCTACCGCGTCTACATCCCAAATACTGGGGAACAACGAGTG 11855 Query 105571 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 105630 ||||| |||||||| | ||||| ||| ||||| | | || |||||| | | Sbjct 11856 TTTTGAGCCCTACACCTCCAACATTTATACCAGAAGGGTATTGTCCGGGGAGTTTATCGT 11915 Query 105631 TGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATA---T 105687 || || ||||||||| |||| || | | | | || | ||| || || | | Sbjct 11916 AGTGAATAAGCATCTCTTGGAAGATTTGGTAAAACTCGGAATTTGG---AATGAAAACCT 11972 Query 105688 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGA 105747 || | || || || ||| |||||||| | |||| ||||| || Sbjct 11973 AAAACAGGAGTTGATGCGCGCCAATGGCTCCATTCAGCACATTGATATAATTCCCGATAG 12032 Query 105748 AATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATG-G 105806 |||||| | ||||| || |||||||| ||| ||||| ||| | ||||| ||| | Sbjct 12033 TATTAAGGAATTGTATAAAACGGTTTGGGAGCTCAGTATGAAAGATATTATTGATATGAG 12092 Query 105807 CCG-CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGT 105865 ||| ||| || || |||||||| || || ||| ||||| | || ||||||| | Sbjct 12093 CCGTCAG--CGAGGGTATTTCATTGACCAGAGCCAATCGTTGAATTTGTTTATGGAAAAT 12150 Query 105866 -CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAAC 105924 ||||| || ||||| | | |||||||| | || |||||| | ||| | ||||| Sbjct 12151 GCCAACTAT-TCCAAATTGACCTCTATGCATTTTTATGCTTGGAAAAGCGGTTTAAAAAC 12209 Query 105925 GGGGATGTATTA 105936 |||||||| || Sbjct 12210 AGGGATGTACTA 12221 >seq83140 Length=1468 Score = 109 bits (120), Expect = 6e-19 Identities = 293/436 (67%), Gaps = 34/436 (8%) Strand=Plus/Minus Query 104597 CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 || ||||| || |||| |||| || ||||| |||||| | || || | || ||||| Sbjct 1419 CGCAAGGGCTCCTTCGCCATCTACCTGGAGCCCTGGCACTCAGACCTCCTTGACTTCCTG 1360 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCT 104715 || ||||| ||||| || | |||||| | | | || | |||||||||| || ||| Sbjct 1359 GATTTGCGGAAGAACCACGGCAAGGAGGAG-CACAGAGCGAGGGATCTCTTCTTCGGTCT 1301 Query 104716 CTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTG 104775 ||||||||| || || ||||||| |||| ||||| || | ||| | | | || Sbjct 1300 CTGGATTCCTGACCTGTTCATGAGACGAGTGAAGGAGGACGGAGACTGGACGTTGATGTG 1241 Query 104776 TCCAGACAAGGCACCTGGTCTCTCCG-ATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACA 104834 || || || ||||| || || | |||| | ||| |||||||||| | | Sbjct 1240 CCCGAACGAGTGCCCTGGGCTGTCTGAATGCTG-GGGGGAGGAGTTTG---------AGA 1191 Query 104835 CAAAGTACGAGGA-----AGAAG---GTCGGGCGACTG-CGACGGTG-----CCAGCTGC 104880 |||||| ||||| ||||| | | || || | ||| ||| |||| || Sbjct 1190 GAAAGTATGAGGAATTCGAGAAGACAGGCAGGGGAAGGAAGACCGTGAGGGCCCAG-TGG 1132 Query 104881 CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTA 104940 | || || ||| ||||| || || | ||||| ||||| || |||||||| || Sbjct 1131 CTGTG-GTTCAAA---ATTCTGGAGAGCCAGATTGAGACCGGTACCCCCTACATGCTGTA 1076 Query 104941 CAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG-ATCAAGAGTTCCA 104999 ||||||||| || ||| |||| || ||| |||| |||| ||| |||||| |||| Sbjct 1075 CAAAGACGCGTGCAACAGAAAGTCCAACCAACAGAACCTGGG-GTGCATCAAGTCATCCA 1017 Query 105000 ATCTCTGTACAGAAAT 105015 | ||||| || ||||| Sbjct 1016 ACCTCTGCACTGAAAT 1001 >seq34284 Length=3714 Score = 109 bits (120), Expect = 6e-19 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 26778 ATGCCCAAGAAAGTTTGGTATGCGCCCAACAAATTTGAATCATATGGGGAGGAAGAAATT 26837 ||||| |||||| ||||||| ||||| ||||| |||||| | |||||||||||||| || Sbjct 2440 ATGCCGAAGAAAATTTGGTACGCGCCAAACAAGTTTGAAGCCTATGGGGAGGAAGAGATA 2381 Query 26838 AAAGCCGTTGAGGCTTGCCTTCGCGATGGCTGGCTCGC 26875 ||||| || ||| | |||||||| ||||||||||| || Sbjct 2380 AAAGCTGTGGAGTCCTGCCTTCGAGATGGCTGGCTTGC 2343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582191318415600