Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq37644 141 3e-28 seq135647 114 4e-20 seq9473 109 2e-18 seq57105 107 6e-18 seq31929 96.9 1e-14 seq56386 91.5 4e-13 seq791 87.8 5e-12 seq10895 86.0 2e-11 >seq37644 Length=6317 Score = 141 bits (156), Expect = 3e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 140538 AGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTT 140597 || || || || || | |||||| || || || | ||||||||||| |||||||| || Sbjct 4531 AGGGTGGATTCCTTCTCAATATTGTAGTCGGAGAGAGTTCGCCCATCCTCAAGTTGCTTG 4472 Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || | ||||||||||| || | |||||||| || |||||||| || Sbjct 4471 CCTGCGAAGATAAGTCTCTGCTGATCAGGCGGGGTCCCTTCTTTGTCTTGAATTTTTTCT 4412 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || ||||| || || || |||||||| || | || || ||||| ||||| || Sbjct 4411 TTCACCGCTTCAATTGAGTCGGAAGGTTCAACATCTAAAGTGACCGTCTTCCCGGTCAGA 4352 Query 140718 GTTTTTACAAAAATCTGCATT 140738 |||||||| ||||||||||| Sbjct 4351 GTTTTTACGTAAATCTGCATT 4331 >seq135647 Length=5675 Score = 114 bits (126), Expect = 4e-20 Identities = 194/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || ||||| | || || || || ||||| ||| Sbjct 5157 ACTGTGCCTGCCTACTTCAACGACTCCCAGAGACAGGCCACCAAGGACGCTGGGGCCATC 5216 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || | ||||| || || || ||||||||||| || || || || || Sbjct 5217 GCTGGTCTCAACGTGATGAGAATCATCAACGAGCCCACTGCTGCCGCCATCGCCTACGGT 5276 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | | | | || | || |||| ||||| ||| | ||||| || ||| Sbjct 5277 CTCGACAAGAAGGGACAGGGTGAGAGGAACGTTCTCATTTTCGATCTCGGTGGAGGCACT 5336 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || | || || || || |||||||| || || || || ||| Sbjct 5337 TTCGATGTGTCTCTCCTGACGATCGAGGACGGGATCTTTGAAGTCAAGGCCACCGCCGGT 5396 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || || ||| | |||||||| ||||| || || || || || Sbjct 5397 GACACCCATTTGGGTGGAGAGGATTTCGACAACCGCCTTGT 5437 >seq9473 Length=1265 Score = 109 bits (120), Expect = 2e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || || || || || || ||||| || ||||| ||||| |||||||| || ||||| Sbjct 1261 GTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGGGGAATC 1202 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || || || || || || || || ||||| || || || || Sbjct 1201 CCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATAGAGTCAGAGGGCTCCACATCG 1142 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || | ||||||||||| || || || || || ||||||||| Sbjct 1141 AGAGTGATCGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATT 1097 >seq57105 Length=498 Score = 107 bits (118), Expect = 6e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||||||||| |||||||| || || |||||||| || || || || || ||| Sbjct 497 AGGCGCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCA 438 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || ||||| || || || ||||| || | ||||| ||||| || || || || ||| Sbjct 437 ATGGAGTCAGAAGGCTCCACATCAAGAGTGATAGTCTTCCCGGTCAGAGTCTTGACGAAA 378 Query 140730 ATCTGCATT 140738 ||||||||| Sbjct 377 ATCTGCATT 369 >seq31929 Length=3365 Score = 96.9 bits (106), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| || || || ||| | || || || || || ||||| | ||| ||| | || || Sbjct 2150 CCGCGATCGGTATTGATCTTGGAACCACCTACTCCTGTGTCGGTGTCTGGAAGAACGACA 2209 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 ||| || || ||||||||||| || || ||| |||| || || || || || || |||| Sbjct 2210 CTGTGGAGATCATTGCAAATGACCAGGGAAACCGAACCACTCCCTCTTATGTCGCCTTTA 2269 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 | || ||||||||| | || || || |||| || || || | || || || | | Sbjct 2270 CTGATACTGAGCGTCTCATCGGAGACGCTGCGAAGAACCAGGTGGCGAGAAACCCCGAGA 2329 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGG 349407 | ||||| || ||||| ||| |||| || || Sbjct 2330 ACACGGTCTTCGATGCCAAGAGACTCATCGG 2360 >seq56386 Length=466 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| ||||| || || || || || || || ||||| | |||| |||||| Sbjct 354 AGCACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGTTCTCCCATCC 413 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTC 140638 ||||| || || || |||||||| || || ||||||||||| |||||||| || Sbjct 414 TCAAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGATCAGGGGGAATTCCCTC 466 >seq791 Length=4806 Score = 87.8 bits (96), Expect = 5e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 423971 TAGCTCAGTTGGTTAGAGCGTGCGGCTGTTAACCGCAATGTCACTGGTTCGATCCC 424026 |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1818 TAGCTCAGTTGGTTAGAGCGTGCGGCTGTTAACCGCAAGGTCATCGGTTCGATCCC 1873 >seq10895 Length=16309 Score = 86.0 bits (94), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 223424 ACTCTTCTTTCaaaaaaaTTTGTTTTTCCTTCTATACTTATCATTTCCATAAAATCAAAC 223483 || ||| ||||||| ||||| ||||| || | || ||||| |||||||||||||| Sbjct 9815 ACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCATATCCATAAAATCAAAT 9756 Query 223484 GGATTACTAGAATTATAAATTTTATTATTTCCTAATTGAACTGCTAATCTATCTGCTACA 223543 ||||| |||||||||| | ||| | | | | || ||| || || || | |||| Sbjct 9755 GGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCAACCAATAGCCTGTCCGTTACA 9696 Query 223544 AATTCTATATATTGTGACATTAATTTACTATTCATACCTATTA-AATTACACGGCAATGC 223602 ||||| | |||||| | ||| | ||| ||||| || || | ||||| || | | Sbjct 9695 AATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAATGAGGCTTACA-GGTAGGGA 9637 Query 223603 TTCACAGATAAACTCTTTTTCTATTTCTACCGCATTTTTTA 223643 ||| |||||||| |||||| || | |||||| ||| Sbjct 9636 TTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTA 9596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1512406531442070