Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq83140 168 7e-37 seq10895 163 3e-35 seq15169 100 3e-16 seq983 87.8 2e-12 >seq83140 Length=1468 Score = 168 bits (186), Expect = 7e-37 Identities = 320/462 (69%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||||| ||||| ||||| | || || ||||||||| || | ||||| |||||| Sbjct 994 CTCGACAATTTCAGTGCAGAGGTTGGATGACTTGATGCACCCCAGGTTCTGTTGGTTGGA 1053 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 ||| ||| || ||||| ||||| |||||| || || |||||||||| ||| |||| Sbjct 1054 CTTTCTGTTGCACGCGTCTTTGTACAGCATGTAGGGGGTACCGGTCTCAATCTGGCTCTC 1113 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTG---- 79273 |||| | ||| | | |||||| || |||| | | || ||||| Sbjct 1114 CAGAATTTTGAACCACAGCCACTGGGCCCTCACGGTCTTCCT-TCCCCTGCCTGTCTTCT 1172 Query 79274 CGACGTACGTCCGGTACAACTCGTTGAAAG-CCTCCCCATAGACATCGGGCAGGCCCGGG 79332 ||| | | || ||| || | ||| ||||||| || || | ||| || ||| Sbjct 1173 CGAATTCC-TCA--TACTT-TCTCTCAAACTCCTCCCCCCAGCATTCAGACAGCCCAGGG 1228 Query 79333 CACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAAC-CTTCTCCATGAAGAG 79391 ||||||| ||||||||||| |||||| |||||| || || | |||| ||||| || Sbjct 1229 CACTCGTTCGGGCACATCAACGTCCAGTCTCCGTCCTCCTTCACTCGTCTC-ATGAACAG 1287 Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451 ||| || ||||| || | |||||| || | | |||||| | ||| ||||| Sbjct 1288 GTCAGGAATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGCTCCTCCTTGCCGTGGTT 1347 Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511 | |||| || || ||||| | || ||| | |||||| |||||||| ||||||||||| Sbjct 1348 CTTCCGCAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGCTCCAGGTAGATGGCGAA 1407 Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGC 79553 || |||||||| ||||| || || |||| |||||||||||| Sbjct 1408 GGAGCCCTTGCGTTTGCCTCCTCCTTGGTCGACGTACCGGGC 1449 Score = 158 bits (174), Expect = 1e-33 Identities = 313/453 (69%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 19451 GCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAG 19510 ||| |||||||| |||| || || ||||||||||||||||| |||||||||||||| ||| Sbjct 1449 GCCCGGTACGTCGACCAAGGAGGAGGCAAACGCAAGGGCTCCTTCGCCATCTACCTGGAG 1390 Query 19511 CCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAG 19570 || |||||| | ||| || | || ||||| || |||| |||||| || | |||||| Sbjct 1389 CCCTGGCACTCAGACCTCCTTGACTTCCTGGATTTGCGGAAGAACCACGGCAAGGAGGAG 1330 Query 19571 ATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAG-G 19628 | | || |||||| ||| | | |||||||| ||||| ||||| |||| | | Sbjct 1329 CACAGAGCGAGGGATCTCTTCTTCGGTC-TCTGGATTCCTGACCTGTTCAT-GAGACGAG 1272 Query 19629 TTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACG 19688 | || |||||| ||| ||| ||||||||||| |||| |||||||| || | || Sbjct 1271 TGAAGGAGGACGGAGACTGGACGTTGATGTGCCCGAACGAGTGCCCTGGGCTGTCTGAAT 1212 Query 19689 TCTACGGCGAGGCGTTCAATGAG-TTGTA-CCGGACTTACGTAGCCCAGGGCCGGTTCAA 19746 || || |||| ||| | ||| ||| ||| || | || ||| || | Sbjct 1211 GCTGGGGGGAGGAGTTTGA-GAGAAAGTATGAGGAATTCGAGAAGACA-GGCAGGGGAAG 1154 Query 19747 GAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGG 19806 |||| || |||||| | | ||| | | || | |||||| | |||||||| Sbjct 1153 GAAGACCGTGAGGGCCCAGTGGCTGTGGTTCAAAATTCTGGAGAGCCAGATTGAGACCGG 1094 Query 19807 CACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGG 19866 || || |||||| ||||| ||||| ||| ||||| || || ||||| | || Sbjct 1093 TACCCCCTACATGCTGTACAAAGACGCGTGCAACAGAAAGTCCAACCAACAGAACCTGGG 1034 Query 19867 CGCGATCAAGTCGTCCAACCTGTGTACTGAAAT 19899 |||||||| |||||||| || |||||||| Sbjct 1033 GTGCATCAAGTCATCCAACCTCTGCACTGAAAT 1001 >seq10895 Length=16309 Score = 163 bits (180), Expect = 3e-35 Identities = 376/563 (67%), Gaps = 4/563 (1%) Strand=Plus/Minus Query 79342 GGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATC 79401 |||||||| | | ||| || || | ||| || || |||||| | || || ||| Sbjct 11060 GGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGCGCTTCATGAACAAATCTGGAATC 11001 Query 79402 CACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGC 79461 |||| ||| ||| || || ||| |||||| || || | || |||||| || Sbjct 11000 CACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGTGGTTCTTCTTCAAT 10941 Query 79462 TCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTG 79521 || | |||||| | || || || ||||| ||||| | ||| ||||| || || || Sbjct 10940 TCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGGCAAAACTTCCTTTT 10881 Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581 ||||| ||||| || || | ||||| || ||||||| || || || | ||||| || Sbjct 10880 CGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATACCCTTAGCATAGGG 10821 Query 79582 ACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC 79641 || || || | || || || || ||| || || || | ||||||| || Sbjct 10820 ACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCGTAGCCCGAACATT- 10762 Query 79642 GAGCAGTGGAT--TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCG 79699 | | | |||| |||||| ||||| | | | |||||| | |||| || ||| | | Sbjct 10761 GTGAA-TGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGGTCTGCTTCAAGG 10703 Query 79700 TCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCT 79759 | ||||| || || ||||| |||||||||||| || | ||||||||| ||||||| Sbjct 10702 TGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGCAGGAGGACATCT 10643 Query 79760 GTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGC 79819 | || ||| ||| |||| |||||||||||| || || || || ||||| | |||| Sbjct 10642 GCGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGGGTGAAATATTTTTTTG 10583 Query 79820 TCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGA 79879 |||||| || || || || || | | || | |||||| || ||||| | Sbjct 10582 ACATCAGCTCATAGGTTTCTATGGCAGAGTCCATATCATTTAAGTGGATTCCAACCGCAA 10523 Query 79880 CGCGCATGAAGAGGTACTGGGGC 79902 ||||||| || | | ||||||| Sbjct 10522 CGCGCATCAACATATGCTGGGGC 10500 Score = 141 bits (156), Expect = 1e-28 Identities = 324/484 (67%), Gaps = 4/484 (1%) Strand=Plus/Plus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 ||||| || || || || ||||| |||||| |||| ||| ||| ||||||||||| | Sbjct 10594 TTCACCCATGCAACACCTACCCTCTTCAACTCCGGAACGCCCAAGCCGCAGATGTCCTCC 10653 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || |||||| |||| |||||||| ||||| || || || || ||||| || | ||| || Sbjct 10654 TGCTTCCTATTGGCCATGAAGGACGACAGTATCGATGGTATTTACGACACCTTGAAGCAG 10713 Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG--GATCCACTGCTCGAATATCCGGT 19373 |||| | |||||| | | | ||||| ||||| |||| | | | ||| | ||| Sbjct 10714 ACCGCGAAAATCTCCCAATCTGCGGGGGGAATCGGACTTTCCA-TTCAC-AATGTTCGGG 10771 Query 19374 CGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCC 19433 | | || || || || || || || || | ||||| ||||| ||||| Sbjct 10772 CTACGGGATCATATATAGCCGGTACCAATGGTACTTCCAATGGTATTGTCCCTATGCTAA 10831 Query 19434 GCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGT 19493 | || || || ||||||| | ||||| | || || ||||| || || || || | Sbjct 10832 GGGTATTTAATGACACGGCACGCTACGTTGATCAAGGAGGCGGGAAGCGAAAAGGAAGTT 10891 Query 19494 TCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGA 19553 | ||||| || | ||||| ||||| ||||| | | || || | ||| || || Sbjct 10892 TTGCCATTTATGTAGAGCCTTGGCATGCGGATATTTTTGACTTTTTGGAATTGAAGAAGA 10951 Query 19554 ACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACC 19613 |||| || | || || ||||| || || || ||| ||| |||||||||| || Sbjct 10952 ACCACGGAAAGGAAGAAATGCGTGCCCGTGATCTGTTCTACGCCATGTGGATTCCAGATT 11011 Query 19614 TATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCC 19673 | |||||| || || ||| | ||||| ||| | | |||||||| | ||||| | Sbjct 11012 TGTTCATGAAGCGCGTGGAGGCCAATGAAGATTGGACCTTAATGTGCCCCAATGAATGTC 11071 Query 19674 CTGG 19677 | || Sbjct 11072 CAGG 11075 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 || ||||||| ||||| ||||| ||| |||||||||||||| || |||| || || Sbjct 11882 TAAATGTTGGAGGTGTAGGGCTCAAAACACTCGTTGTTCCCCAGTATTTGGGATGTAGAC 11823 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCAT 78637 ||||| |||||||| ||||||| || || || || | ||||| Sbjct 11822 GCGGTAGGCATGGGAGCGACCAACAGGGAGTTGCGCACACCAT 11780 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434 |||||||| || | ||||| |||||||| ||||| || || |||| || |||||||| Sbjct 11788 CGCAACTCCCTGTTGGTCGCTCCCATGCCTACCGCGTCTACATCCCAAATACTGGGGAAC 11847 Query 20435 AACGAGGCTTTCGAGCCGTACACGACCAACATCTA 20469 |||||| ||| ||||| ||||| ||||||| || Sbjct 11848 AACGAGTGTTTTGAGCCCTACACCTCCAACATTTA 11882 >seq15169 Length=4399 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | |||||| | ||| |||||||| ||||||| ||||||||| | |||||| Sbjct 1224 GTGCGGAGATAGTAGACGCCGGTCTTGAGTCCCTTCTCCCATCCGTAGAAGTGCATGGAG 1165 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 ||||||||||| | | ||| |||||| |||||| ||||||||| |||||| ||| Sbjct 1164 GACAGCTTGGCGAAGGTGGGGCCTTCCATGTGGATGTTCAGCGACTGGCTCTGGTCAATG 1105 Query 78310 TACGCACC 78317 |||| ||| Sbjct 1104 TACGGACC 1097 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414 |||| | |||| ||| || | ||||| | ||| |||| |||||||| || || |||| Sbjct 192 AGATGATGACCACCGGACTGAGGAACTCCCTCCTCCTCGCCCCCATGCCCACTGCATCGA 251 Query 20415 CCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACT 20471 || ||||||| |||| ||||| ||| | || ||||| | ||| |||||||||||| Sbjct 252 CCAGCCAGATCCTGGGCAACAATGAGTCCTTTGAGCCCTTCACCTCCAACATCTACT 308 >seq983 Length=6241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 79560 GTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATT-- 79617 |||||| |||| ||||||||| |||| ||||| | ||||| ||||| |||| Sbjct 62 GTTGAAGACTCTGAGCATGGGGACGAGGCCGTTTGACCTTCCGTTGGTCCCCCTGATGTA 121 Query 79618 CGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG-ATTCCGATGCCCCCGGACCACTTGGA 79676 || || | | || | ||||| | ||| | | |||||||||||| | |||||| Sbjct 122 CGAGTCCTGA--GCTCTGATGTT-GTGCACCGCCAGTCCGATGCCCCCAGCGTGCTTGGA 178 Query 79677 GATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCT 79729 ||| |||||||| ||| || || ||| ||||||||||||||||||| |||| Sbjct 179 GATCATCGCGCACTGCTTCAGAGTGTCGAAGATGCCCTCGATCGAGTCCTCCT 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547519011213600