Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq5209 196 2e-45 seq18646 154 6e-33 >seq5209 Length=31209 Score = 196 bits (216), Expect = 2e-45 Identities = 368/531 (69%), Gaps = 14/531 (3%) Strand=Plus/Plus Query 4561 GGGCGGCGGCATCGGCTACGACTTCTCCACCCTGCGCCCCAAGGGCGACCTCATCGTC-- 4618 |||||||||||||||||||||||| ||||||||||| ||||| || | ||| || | Sbjct 9746 GGGCGGCGGCATCGGCTACGACTTTTCCACCCTGCGGCCCAAAGGGGCCCTGGTCCACGG 9805 Query 4619 AAGCTGCAGTCCCGCAGC-TCCGGCCCCATCTCCTTCATGGAGATTTTCGACGCAGTCTG 4677 || | || ||| || |||||||| | ||||||||||| | | || || | || Sbjct 9806 AATCGGCG---CCGATGCATCCGGCCCGCTGTCCTTCATGGATGTCTGGGATGCCATGTG 9862 Query 4678 CCGCTGCA-CGTCCTCGTCCGGCCACCGGCGTGGCGCGCAGATGGGCGTCCTGCGCATCG 4736 ||| || | | || ||||| || || ||||| ||||| | |||| | || Sbjct 9863 CCGGACCATCATGAGCG-CCGGCTCGCGCCGCGGCGCCATGATGGCCACCCTGGCCTGCG 9921 Query 4737 ACCACCCCGACATCTTCGACTTCGTCCGCGCCAAGCAGAA-CGAGACCTTCCTGCGCGGC 4795 |||| || |||||| | |||| || ||||||||| | | | | | | || | Sbjct 9922 ACCATCCGGACATCGAAGTCTTCATCGAGGCCAAGCAGGAGCCGGGGCGGCTTTCGATG- 9980 Query 4796 TTCAACATCTCCATCGCCGTCACGGACGAGTTCATGCGGGCCAAGCGCGACGGCAAGCCC 4855 ||||| | || | |||| |||| ||||||| ||| ||| || | | ||||| Sbjct 9981 TTCAATCTTTCGGTGCTGGTCAGCGACGCCTTCATGCAGGCGGTGCGTGAAGACCAGCCC 10040 Query 4856 T--TCCAGCTGAAGTTCGGCGGCCGCGTCTACCGCGAGGTGGACCCCAACGAGCTGTGGG 4913 | ||| || | |||| || || ||| | ||| | | | |||| |||| Sbjct 10041 TGGTCC--CTCAGCTTCGAGGGTACGGTTTACAAGGTGGTACAGGCGCGCAAGCTCTGGG 10098 Query 4914 ACGCGGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATCGACCGCA 4973 ||| |||||| | ||||| | | |||||||||||||| | ||||||||||||| Sbjct 10099 ACGGCATCATGCACGCCACCCACGCCGCTGCCGAGCCGGGCGTGATCTTCATCGACCGCA 10158 Query 4974 TCAACGAGATGAACAACCTCCACTACTGCGAGACCATCGCGGCGACCAACCCGTGCGGCG 5033 |||| || |||||||| |||||||||||||||||| || |||||||| || |||| Sbjct 10159 TCAATCAGCGCAACAACCTGCACTACTGCGAGACCATCAGCGCCACCAACCCCTGTGGCG 10218 Query 5034 AGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGCTCGGCTCCTTCAACCTGG 5084 | ||||||||||| || | |||||||||||||| ||||| |||| |||| Sbjct 10219 AACAGCCGCTGCCGCCCTATGGCGCCTGCCTGCTGGGCTCGATCAATCTGG 10269 Score = 84.2 bits (92), Expect = 8e-12 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 5449 CGAGGACATCCGCGAGATGATCGAGGAGCACGGCGTCCGCAACTCCCACCTGACCAGCAT 5508 |||||| ||||||| | |||| |||||| |||||||| ||| | ||| | | Sbjct 10640 CGAGGAGATCCGCGCGGGCATCGCCCGCCACGGCATCCGCAACGCCCTGGTCACCTCCGT 10699 Query 5509 CGCCCCGACCGGCACCATC-AGCCTCTGTGCCGACAACATCAGCTCGGGCCTGGAGCCGG 5567 ||| ||||||||||||||| || ||| |||| ||||||| ||| || |||||||||| Sbjct 10700 CGCGCCGACCGGCACCATCTCGCTGCTG-GCCGGCAACATCTCCTCCGGGCTGGAGCCGG 10758 Query 5568 TGTTC 5572 ||||| Sbjct 10759 TGTTC 10763 >seq18646 Length=3619 Score = 154 bits (170), Expect = 6e-33 Identities = 377/558 (68%), Gaps = 24/558 (4%) Strand=Plus/Plus Query 4539 AGGCGGCGGCGACCATGC-GCATGGGCGGCGGCATCGGCTACGACTTCTCCACCCTGCGC 4597 ||||||| |||| ||| ||| ||||||||||||||| ||||||||||| ||||||||| Sbjct 704 AGGCGGCCCTGACCCTGCAGCA-GGGCGGCGGCATCGGTTACGACTTCTCGACCCTGCGC 762 Query 4598 CCCAAGGGCGACCTCATCGTCAAGCTGCAGTCC-CGCAG----CTCCGGCCCCATCTCCT 4652 || | ||| | |||| ||| || ||| ||| | ||| || || || | Sbjct 763 CC---GCGCGGAGCCGTCGTGAAGG-GC-GTCGGCGCGGATGCCTCGGGTCCGCTCAGTT 817 Query 4653 TCATGGAGATTTTCGACGCAGTCTGCCGCTGCACGTCCTCGTCCGGCCACCGGCGTGGCG 4712 ||||||| ||| ||||| | ||||| || ||| | ||||||||||| |||| Sbjct 818 TCATGGACGTTTGGGACGCCATGTGCCGGACCATCATGTCGGCGGGCCACCGGCGCGGCG 877 Query 4713 CGCAGATGGGCGTCCTGCGCATCGACCACCCCGACATCTTCGACTTCGTCCGCGCCAAGC 4772 | ||||||| ||||||| |||||| ||||| ||| | |||| ||| || ||| Sbjct 878 CCATGATGGGCACCCTGCGCTGCGACCATCCCGATATCGAAGCCTTCATCCAGGCGAAGT 937 Query 4773 AGAACGAGACCTTCCTGCGCGGCTTCAACATCTCCATCGCCGTCACGGACGAGTTCATGC 4832 | | | | | ||| | |||||| |||| | || || || | |||||| Sbjct 938 CGGAGGCGGGCCGGCTGACCAACTTCAATCTCTCGGTGCTGGTGACCGATGCCTTCATG- 996 Query 4833 GGGCCAAGCGCGACGGCAAGCCCTTCCAG---CTGAAGTTCGGCGGCCGCGTCTACCGCG 4889 ||| | ||| | | | || | | |||| |||| ||||| |||| | | Sbjct 997 --GCCGCGGTCGAGGCCGATGCCGACTGGACCCTGACCTTCGCCGGCCAGCCCTACGG-G 1053 Query 4890 AGGTGG-ACCCCAACGAGCTGTGGGACGCGGTCATGCGCTCCACCT--GGGACTGGGCCG 4946 | | || | | | ||||||||||| ||||||| | |||| | ||| | || Sbjct 1054 ACGCGGCAGGCGCGGGCGCTGTGGGACGGCATCATGCGTGCGACCTACGAGACCAG--CG 1111 Query 4947 AGCCGGGCGTCCTGTTCATCGACCGCATCAACGAGATGAACAACCTCCACTACTGCGAGA 5006 ||||||| || | || |||||| | |||||| | |||| ||| ||||||||| Sbjct 1112 AGCCGGGTGTGATCTTTATCGACAGGATCAACCGGCTGAATCCCCTGGCCTACTGCGAAG 1171 Query 5007 CCATCGCGGCGACCAACCCGTGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGC 5066 |||| || || ||||| ||||| |||||||||||||| || | ||||||||| |||| Sbjct 1172 ACATCCGCGCCACGAACCCTTGCGGAGAGCAGCCGCTGCCGCCTTACGGCGCCTGTCTGC 1231 Query 5067 TCGGCTCCTTCAACCTGG 5084 ||||||| | ||||||| Sbjct 1232 TCGGCTCGCTGAACCTGG 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187190156282220