Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq10665 206 9e-49 seq1671 190 7e-44 seq52713 120 1e-22 >seq10665 Length=3382 Score = 206 bits (228), Expect = 9e-49 Identities = 236/315 (75%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 ||||| || |||||| |||||| ||| |||||||||||| |||||| |||| Sbjct 2273 CCGAACGTAATGATCTGAGCGACCCGGTCCCGCCCGTACTTCTCCTGTACGTACTGGATC 2332 Query 40151 ACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 || ||| | || || || | || |||||||||||| | ||| ||||| || ||||||| Sbjct 2333 ACTTCGTCCCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGCT 2390 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGAT-----CGAGGTCGGT 40263 |||| || |||||||||||||| | || | ||||| |||| |||||||||| Sbjct 2391 CGGGATTGAGGAACCGCTCGAACAGCAG-----GTTCCAGCGGATCGGATCGAGGTCGGT 2445 Query 40264 GATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCA 40323 |||| || | ||||||||||||| ||||| ||||||| ||||| || |||||| Sbjct 2446 GATCTTCAGCGACCAGGCGACCAGCGAGCCGGCGCCCGAGCCGCGCCCGGGGCCGACCGG 2505 Query 40324 CACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40383 | |||| | ||||||||| ||||||||| ||||||| |||||||||| ||||| Sbjct 2506 TATGCCGCGATTCTTGGCCCACTGGATGAAGTCCGCGACGATCAGGAAGTAGCCGGGGAA 2565 Query 40384 GCCCATCTGGATGAT 40398 |||||||||| ||| Sbjct 2566 CCCCATCTGGACGAT 2580 Score = 107 bits (118), Expect = 6e-19 Identities = 231/339 (68%), Gaps = 16/339 (5%) Strand=Plus/Plus Query 39022 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39081 |||||||| | |||| |||| | || || ||||| ||| ||||| ||||||||| | Sbjct 1249 GGCCGCCAGGAACTCCACCGGATGGTTCGCCTTCATGTAGGCCGTCTGGTAGGCGACCAA 1308 Query 39082 CCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 39141 | || || || | |||| |||||||||| |||| || ||||| ||| || || Sbjct 1309 GGCATAGGCGGCGGCATGCGACTTGTTGAAGCCGTAGCCCGCGAACTTGGCGACCAGATC 1368 Query 39142 CCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTC-----GCGCGCTCCCTTCTGG 39196 | | |||| || | || | | | | ||| ||| | || || ||| | Sbjct 1369 GAAGATCGCC--GAGGCCG-TCTTCTCG--GCCACGCCCTTGGTGCCTGCGCCCGAGACG 1423 Query 39197 AAGTTCACGAACTCCTTGGCCAGAACCTCGG--GCT-TCTTCTTGCCCATGGCCCGACGC 39253 ||| || || || ||| | ||||| || |||||||||||||||| |||||| Sbjct 1424 AAGATCTCGCGCTG---GGCATCCATCTCGGAGGCGATCTTCTTGCCCATGGCGCGACGC 1480 Query 39254 AGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGC 39313 ||||||||||| |||||| |||||||| || || ||| || || | ||||| Sbjct 1481 AGCAGGTCGGCGCCGCCCAGACTGTAGCCGGCCAGTTCCTGGGCGATCTGCATGACCTGT 1540 Query 39314 TCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATC 39352 ||||||||||| |||| |||| | ||| | |||||||| Sbjct 1541 TCCTGGTAGATCATGATCCCGAAGGTCTCGACCAGGATC 1579 >seq1671 Length=6144 Score = 190 bits (210), Expect = 7e-44 Identities = 226/302 (75%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 |||||||| |||||| ||||| | |||| |||||||| || |||||| ||||| Sbjct 4468 CCGAAGGTAATGATCTGGGCGACGTGGTCGCGGCCGTACTTGTCCTGGACGTAGCGGATC 4527 Query 40151 ACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 |||||| |||| || || | || ||||||||||| | ||||||||| |||||||||| Sbjct 4528 ACCTCGTCGCGGCGGTCCTGGCAA--AAGTCGATGTCGAAGTCGGGCATCGACACGCGCT 4585 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCG-TGCTCCAGTGGATCGAGGTCGGTGATC 40267 |||| || ||||| |||||||| | || ||| || | || || || ||||||||||| Sbjct 4586 CGGGATTGAGGAAGCGCTCGAACAACAGGCCGAAGCGCAAG-GGGTCCAGGTCGGTGATG 4644 Query 40268 CCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327 ||| ||||||||| ||||||||| |||| || ||||| || |||||| | Sbjct 4645 GTGAGCGCCCAGGCGACCACCGAACCGGCACCCGAACCACGCCCCGGCCCGACCGGGATA 4704 Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387 ||| | ||||||||| ||||||||| || |||| |||||||||| | |||||| Sbjct 4705 TCGTGCGACTTGGCCCACTTGATGAAGTCCGCAACGATCAGGAAGTAGCCAGCAAAGCCC 4764 Query 40388 AT 40389 || Sbjct 4765 AT 4766 Score = 95.1 bits (104), Expect = 4e-15 Identities = 218/324 (67%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 39022 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39081 ||| || ||| | ||| |||| | || | |||||| || ||||| | ||||| | || Sbjct 3444 GGCGGCGATGAATTCGACCGGATGGTTGGCCTTCAGATAGGCCGTCTGATAGGCCACCAG 3503 Query 39082 CCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 39141 |||| | || ||||||||||||||||| |||| |||||||| ||| || ||| Sbjct 3504 GGCGTAGCCGGCGGAGTGCGCCTTGTTGAAACCGTAGCCGGCGAACTTGTCGACCAGGTC 3563 Query 39142 CCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTCGCGC---GCTCCCTTCTGGAA 39198 | || ||| ||||| ||| | | | | | | || ||||| ||| Sbjct 3564 GAAGACGTA--GGA-GGCGCGATCCTTCTTCACGCCTTTGGCCATGGCGCCCTTTACGAA 3620 Query 39199 GTTCACGAACTCCTTGGCCAGAACCTCGGGCTT---CTTCTTGCCCATGGCCCGACGCAG 39255 | | || || ||| | ||| | ||| ||||||||||||||| || ||||| Sbjct 3621 GATGTCGCGCTG---GGCATCCATCTCCGCCTTGATCTTCTTGCCCATGGCGCGGCGCAG 3677 Query 39256 CAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTC 39315 |||||||||||| || || ||||| | || | || ||| || || | |||||| || Sbjct 3678 CAGGTCGGCCTGCCCGAGCGTGTAGTCGGCAAAGACCTGGGCGATCTGCATCACCTGTTC 3737 Query 39316 CTGGTAGATGATGAGCCCGTACGT 39339 ||| |||||||||| ||||| || Sbjct 3738 CTGATAGATGATGACGCCGTAGGT 3761 >seq52713 Length=37184 Score = 120 bits (132), Expect = 1e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 40102 GATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCG 40161 ||||||||| || | || |||||| || || | | ||||||| |||||| |||||| Sbjct 6293 GATCTGTGCTACTTGGTTGGCCCCATATTTATTGATGACGTAATCCATGACCCGGCCGCG 6352 Query 40162 ACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAA 40221 | | ||||| || || || |||| ||||||||||| || || || || || ||||| Sbjct 6353 GCCCTCATCATCAAAATCAATATCAATATCGGGCATGGATACCCGATCCGGATTTAGGAA 6412 Query 40222 CCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGC 40281 |||||| || | || ||| || ||||| || | || || ||| | |||||| || Sbjct 6413 CCGCTCAAAAAGCAGATCGTATTCAAGTGGGTCTATGTTTGTAATCTTTAAGCAGTAAGC 6472 Query 40282 GACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGAC 40320 |||| |||||||| |||||||| || || || || || Sbjct 6473 CACCACGGAACCGGCAGCCGAGCCACGGCCGGGGCCCAC 6511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160126981074060