Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq10665 187 8e-43 seq1671 158 4e-34 >seq10665 Length=3382 Score = 187 bits (206), Expect = 8e-43 Identities = 229/308 (74%), Gaps = 10/308 (3%) Strand=Plus/Plus Query 38998 CCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATC 39057 ||| |||| |||||| |||||| ||| | ||||||||||| |||||| ||||| Sbjct 2273 CCGAACGTAATGATCTGAGCGACCCGGTCCCGCCCGTACTTCTCCTGTACGTACTGGATC 2332 Query 39058 ACGTCGCCACGGCGA--CGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCT 39115 || ||| | ||||| | | || |||||||||||| | ||| ||||| ||||| |||| Sbjct 2333 ACTTCGTCCCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGCT 2390 Query 39116 CAGGGTTCAGGAACCGCTCGAAGATGAGC--CCGTGAG-GGATGGGGTCCAGGTCGGTGA 39172 | || || |||||||||||||| | || || || |||| || || |||||||||| Sbjct 2391 CGGGATTGAGGAACCGCTCGAACAGCAGGTTCC---AGCGGATCGGATCGAGGTCGGTGA 2447 Query 39173 TCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACA 39232 || || | | ||| |||||||||| || | ||||||||||| ||||||||| | Sbjct 2448 TCTTCAGCGACCAGGCGACCAGCGAGCCGGCGCCCGAGCCGCGCCCGGGGCCGACCGGTA 2507 Query 39233 CGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACC 39292 |||| | ||| ||||| ||||||||| ||||||| |||||||| ||||||| Sbjct 2508 TGCCGCGATTCTTGGCCCACTGGATGAAGTCCGCGACGATCAGGAAGTAGCCGGGGAACC 2567 Query 39293 CCATCTGG 39300 |||||||| Sbjct 2568 CCATCTGG 2575 Score = 123 bits (136), Expect = 8e-24 Identities = 398/608 (65%), Gaps = 46/608 (8%) Strand=Plus/Plus Query 37929 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 37988 |||||||| | |||| |||| | || || ||||| ||| ||||| ||||||||| | Sbjct 1249 GGCCGCCAGGAACTCCACCGGATGGTTCGCCTTCATGTAGGCCGTCTGGTAGGCGACCAA 1308 Query 37989 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38048 | || || || | |||| |||||||||| |||| || ||||| ||| || || Sbjct 1309 GGCATAGGCGGCGGCATGCGACTTGTTGAAGCCGTAGCCCGCGAACTTGGCGACCAGATC 1368 Query 38049 CCACACCGCCCGGATGGCAGCCTCCGAGTAGCCTCGCTC-----GCTCGCCCCCTTCTGG 38103 | | |||| || ||| | || | | ||| ||| | || || ||| | Sbjct 1369 GAAGATCGCC--GA-GGCCGTCTTCTCG--GCCACGCCCTTGGTGCCTGCGCCCGAGACG 1423 Query 38104 AAGTTCACGAACTCCTTGGCCAGCACCTCGG--GCT-TCTTCTTGCCCATGGCGCGACGG 38160 ||| || || || ||| || ||||| || |||||||||||||||||||||| Sbjct 1424 AAGATCTCGCGCTG---GGCATCCATCTCGGAGGCGATCTTCTTGCCCATGGCGCGACGC 1480 Query 38161 AGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGC 38220 || |||||||| || || |||| |||||||| ||| || || | ||||| Sbjct 1481 AGCAGGTCGGCGCCGCCCAGACTGTAGCCGGCCAGTTCCTGGGCGATCTGCATGACCTGT 1540 Query 38221 TCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACC 38280 ||||||||||| |||| |||||||||| | ||||||| |||||| | || Sbjct 1541 TCCTGGTAGATCATGATCCCGAAGGTCTCGACCAGGAT---------CGGCTC--CAACG 1589 Query 38281 TCGG-----GGTGGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCG 38335 |||| | | | ||||| |||||| || ||| |||||| | | || | | Sbjct 1590 TCGGATAGAGATAGTCCGGCG---TCTCCT-CT--CCGGCCTTGCGCCTGATGAAGCTGG 1643 Query 38336 TG-TGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCC 38394 | || | ||||||| || || || || || | ||| | ||| || |||| Sbjct 1644 GGATG-------TTCTCCATCGGGCCGGGCCGATAGAGGGAGACCATGGCGATGACGTCC 1696 Query 38395 TCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGG 38454 |||||| |||||||||| || ||| || | |||||| || || || |||||| Sbjct 1697 TCGAACCGGTCCGGCTTGAGTTTGCGCAGGGCGTCGCGCATGCCGGAGCTTTCCAGCTGG 1756 Query 38455 AAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGG 38514 || ||| | |||||||| | |||| | | ||||| | | |||||||||||| Sbjct 1757 AACACCCCCACCGTGTCGCCGCGCGCCATGACCCGGTAGGCCTCGGCGTCGTCCAGCGGC 1816 Query 38515 ATGTTCTC 38522 | | |||| Sbjct 1817 AAGGTCTC 1824 >seq1671 Length=6144 Score = 158 bits (174), Expect = 4e-34 Identities = 250/355 (70%), Gaps = 9/355 (3%) Strand=Plus/Plus Query 38933 CGACCTG--GA-AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCT 38989 ||||||| || ||||| | | |||||| ||| | | || || ||| ||||||| Sbjct 4400 CGACCTGCGGATAGGGCATCTGCAGCACCCGGCCGACATCGCGCAGGGCGGCCCGCGCCT 4459 Query 38990 TGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGT 39049 | |||| | || |||||| ||||| | ||| | ||||||||| || ||||| Sbjct 4460 GCAGTTTTCCGAAGGTAATGATCTGGGCGACGTGGTCGCGGCCGTACTTGTCCTGGACGT 4519 Query 39050 ACCGGATCACGTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGTCGGGCATGG 39106 | |||||||| ||| | ||||| ||| | | ||||||||||| | ||||||||| | Sbjct 4520 AGCGGATCACCTCGTCGCGGCG---GTCCTGGCAAAAGTCGATGTCGAAGTCGGGCATCG 4576 Query 39107 AGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGT 39166 | || ||||| || || ||||| |||||||| | || ||| | | ||||||||||| Sbjct 4577 ACACGCGCTCGGGATTGAGGAAGCGCTCGAACAACAGGCCGAAGCGCAAGGGGTCCAGGT 4636 Query 39167 CGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGA 39226 ||||||| ||| || | ||| ||| ||| || || | || || ||||| || |||| Sbjct 4637 CGGTGATGGTGAGCGCCCAGGCGACCACCGAACCGGCACCCGAACCACGCCCCGGCCCGA 4696 Query 39227 CCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTA 39281 || | ||| | ||| ||||| ||||||||| || |||| |||||||| Sbjct 4697 CCGGGATATCGTGCGACTTGGCCCACTTGATGAAGTCCGCAACGATCAGGAAGTA 4751 Score = 105 bits (116), Expect = 2e-18 Identities = 220/323 (68%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 37929 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 37988 ||| || ||| | ||| |||| | || | |||||| || ||||| | ||||| | || Sbjct 3444 GGCGGCGATGAATTCGACCGGATGGTTGGCCTTCAGATAGGCCGTCTGATAGGCCACCAG 3503 Query 37989 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38048 |||| | || ||||||||||||||||| |||| |||||||| ||| || ||| Sbjct 3504 GGCGTAGCCGGCGGAGTGCGCCTTGTTGAAACCGTAGCCGGCGAACTTGTCGACCAGGTC 3563 Query 38049 CCACACCGCCCGGATG-GC-AGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAG 38106 | || ||| | || | ||| | |||| | | || ||||| |||| Sbjct 3564 GAAGACGTA--GGAGGCGCGATCCTTCTTCACGCCTTTGGCCATGGCGCCCTTTACGAAG 3621 Query 38107 TTCACGAACTCCTTGGCCAGCACCTCGGGCTT---CTTCTTGCCCATGGCGCGACGGAGG 38163 | || || ||| || ||| | ||| |||||||||||||||||| || || Sbjct 3622 ATGTCGCGCTG---GGCATCCATCTCCGCCTTGATCTTCTTGCCCATGGCGCGGCGCAGC 3678 Query 38164 AGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCC 38223 ||||||||||| ||||| ||||| |||| | || ||| || || | |||||| ||| Sbjct 3679 AGGTCGGCCTGCCCGAGCGTGTAGTCGGCAAAGACCTGGGCGATCTGCATCACCTGTTCC 3738 Query 38224 TGGTAGATGATGAGCCCGAAGGT 38246 || |||||||||| ||| |||| Sbjct 3739 TGATAGATGATGACGCCGTAGGT 3761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159436985105580