Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq5209 154 5e-33 seq18646 141 3e-29 >seq5209 Length=31209 Score = 154 bits (170), Expect = 5e-33 Identities = 682/1052 (65%), Gaps = 71/1052 (7%) Strand=Plus/Plus Query 3996 GGGCGGCGGCATCGGCTACGACTTCTCCACCCTGCGCCCCAAGGGCGACCTGATCGTC-- 4053 |||||||||||||||||||||||| ||||||||||| ||||| || | |||| || | Sbjct 9746 GGGCGGCGGCATCGGCTACGACTTTTCCACCCTGCGGCCCAAAGGGGCCCTGGTCCACGG 9805 Query 4054 AAGCTGCAGTCCCGCAGC-TCCGGCCCCATCTCCTTCATGGAGATTTTCGACGCGGTCTG 4112 || | || ||| || |||||||| | ||||||||||| | | || || | || Sbjct 9806 AATCGGCG---CCGATGCATCCGGCCCGCTGTCCTTCATGGATGTCTGGGATGCCATGTG 9862 Query 4113 CCGCTGCA-CGTCCTCGTCCGGCCACCGCCGTGGCGCCCAGATGGGCGTCATGCGCATCG 4171 ||| || | | || ||||| ||||| |||||| ||||| | | || | || Sbjct 9863 CCGGACCATCATGAGCG-CCGGCTCGCGCCGCGGCGCCATGATGGCCACCCTGGCCTGCG 9921 Query 4172 ACCACCCCGACATCTTCGAGTTCATCCACGCCAAGCAGAA-CGAGCACTTCCTGCGCGGC 4230 |||| || |||||| | |||||| | ||||||||| | | | | | | || | Sbjct 9922 ACCATCCGGACATCGAAGTCTTCATCGAGGCCAAGCAGGAGCCGGGGCGGCTTTCGATG- 9980 Query 4231 TTCAATATCTCCATCGCCGTCACCGACGAGTTCATGGAGTGCAAGCGGGACGGCAAGCCG 4290 |||||| | || | |||| ||||| |||||| || ||| || | | |||| Sbjct 9981 TTCAATCTTTCGGTGCTGGTCAGCGACGCCTTCATGCAGGCGGTGCGTGAAGACCAGCCC 10040 Query 4291 T--TCC---AGCTGAAGTGGGGCGGGCGCGTCTACCGCGAGGTCGACCCCAACGAGCTGT 4345 | ||| |||| | | | | || || ||| | ||| | | | |||| | Sbjct 10041 TGGTCCCTCAGCT----TCGAGGGTACG-GTTTACAAGGTGGTACAGGCGCGCAAGCTCT 10095 Query 4346 GGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATCGACA 4405 |||||| |||||| | ||||| | | |||||||||||||| | ||||||||| Sbjct 10096 GGGACGGCATCATGCACGCCACCCACGCCGCTGCCGAGCCGGGCGTGATCTTCATCGACC 10155 Query 4406 CCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGCGGCCACCAACCCGTGCG 4465 |||||| | ||||| || ||||||||| || ||||||||||| || | Sbjct 10156 GCATCAATCAGCGCAACAACCTGCACTACTGCGAGACCATCAGCGCCACCAACCCCTGTG 10215 Query 4466 GCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTTGGCTCCTTCAACCTGG-TGCGC 4524 |||| ||||||||||| || | |||||||||||||| ||||| |||| |||| ||| | Sbjct 10216 GCGAACAGCCGCTGCCGCCCTATGGCGCCTGCCTGCTGGGCTCGATCAATCTGGCTGCCC 10275 Query 4525 T----ATCTGCGGCGCGACATGGTTGGCTGGTCCTTCGACTGGTGCCAGCTCGCCGAGGA 4580 | ||| |||| | | || | || | || | | | || | |||| Sbjct 10276 TGGTGATC--CGGCCTTTCGAAGATGACGCCGCCCTGGA-TATCGACGCCTTG--GAGGC 10330 Query 4581 C---ATCCCGGTCGTCGTGCGCGCCATGGACAACGTGGTCGACCGGGCCCGC-TACCCGT 4636 | | ||| | |||||| | ||||||| ||||| ||||| | ||| | Sbjct 10331 CCTGGTGCCGACGGCGGTGCGCATGCTCGACAACGCCATCGACGTTTCCCGCTTTCCCCT 10390 Query 4637 TGCCGCAGCAGGAGCAGGAGGCGAGGTCCAAACGCCGGATGGGCCTGGGTGTGACCGCCC 4696 || || |||| |||||||| | |||| || ||||| |||||||| | |||| || Sbjct 10391 TGAGGC-GCAGCGCCAGGAGGCCCAGGCCAAGCGGCGGATCGGCCTGGGCATCACCGGCC 10449 Query 4697 TGGCGAACGCGGGCGAGGCCCTG-GGCCACCCCTACGGCTCGCCCG--GCTTCCTGGACT 4753 | || | || | || ||| |||| | ||| ||||| ||| || || | Sbjct 10450 TTGCCGATGC-GCTGATCTGCTGCGGCCTGCGCTATGGCTCCGCCGAAGC-----GG--T 10501 Query 4754 TCACCCG-CCGCGTGCTGACGATGG------TGCGCGACGAGTCCTACCGCGCGTCGGCC 4806 | | || | | | |||| ||||| | ||| | |||| | || || | | Sbjct 10502 GCGCACGACGGAGCGCTG--GATGGCGGCCTTCCGCCGGGCCGCCTATCTGGCCTCCGTC 10559 Query 4807 CTGTTGGCCCATGAGAAGGGCTCCTTCCCGCTCTTCGAGGCCGAGCAG--TACCTGGAGT 4864 |||| | ||||| ||| |||||||||||||||| ||| | || || ||| Sbjct 10560 AAACTGGCGGAGGAGAAAGGCCCCTTCCCGCTCTTCGA--CCGCGAAGCCTATCTG---- 10613 Query 4865 CCGCCTTCGTGAAGACC------CTGCCCGAGGACGTCCGCGAGATGATCGCCGAGCTGG 4918 ||| || | || | ||| |||||| |||||| | |||||| | | Sbjct 10614 --GCCGGCGAAACGATCCGCGAGCTGGACGAGGAGATCCGCGCGGGCATCGCCCGCCACG 10671 Query 4919 GCATCCGCAACTCCCACCTGACCTCCATCGCGCCGACCGGCACCATCAGCCTGTGCGCCG 4978 ||||||||||| ||| | |||||| |||||||||||||||||||| ||| |||| Sbjct 10672 GCATCCGCAACGCCCTGGTCACCTCCGTCGCGCCGACCGGCACCATCTCGCTGCTGGCCG 10731 Query 4979 ACAACGTGAGCTCCGGCCTGGAGCCCGTGTTC 5010 |||| | |||||| |||||||| |||||| Sbjct 10732 GCAACATCTCCTCCGGGCTGGAGCCGGTGTTC 10763 >seq18646 Length=3619 Score = 141 bits (156), Expect = 3e-29 Identities = 381/561 (68%), Gaps = 30/561 (5%) Strand=Plus/Plus Query 3974 AGGCAGCCGCGACCATGC-GCATGGGCGGCGGCATCGGCTACGACTTCTCCACCCTGCGC 4032 |||| ||| |||| ||| ||| ||||||||||||||| ||||||||||| ||||||||| Sbjct 704 AGGCGGCCCTGACCCTGCAGCA-GGGCGGCGGCATCGGTTACGACTTCTCGACCCTGCGC 762 Query 4033 CCCAAGGGCG-ACCTGATCGTCAAGCTGCAGTCC-CGCAG----CTCCGGCCCCATCTCC 4086 || | ||| | | | |||| ||| || ||| ||| | ||| || || || Sbjct 763 CC---GCGCGGAGCCG-TCGTGAAGG-GC-GTCGGCGCGGATGCCTCGGGTCCGCTCAGT 816 Query 4087 TTCATGGAGATTTTCGACGCGGTCTGCCGCTGCACGTCCTCGTCCGGCCACCGCCGTGGC 4146 |||||||| ||| ||||| | ||||| || ||| | |||||||| || ||| Sbjct 817 TTCATGGACGTTTGGGACGCCATGTGCCGGACCATCATGTCGGCGGGCCACCGGCGCGGC 876 Query 4147 GCCCAGATGGGCGTCATGCGCATCGACCACCCCGACATCTTCGAGTTCATCCACGCCAAG 4206 ||| ||||||| | ||||| |||||| ||||| ||| | |||||||| || ||| Sbjct 877 GCCATGATGGGCACCCTGCGCTGCGACCATCCCGATATCGAAGCCTTCATCCAGGCGAAG 936 Query 4207 CAGAACGAGCACTTCCTGCGCGGCTTCAATATCTCCATCGCCGTCACCGACGAGTTCATG 4266 | | | | | ||| | ||||||| |||| | || ||||| | |||||| Sbjct 937 TCGGAGGCGGGCCGGCTGACCAACTTCAATCTCTCGGTGCTGGTGACCGATGCCTTCATG 996 Query 4267 GAGTGCAAGCGGGACGGCAAGCCGT-TCCAGC-TGAAGTGGGGCGGGCGCGTCTACCG-- 4322 | || || | | | | |||| | | | ||| | | ||| | |||| | Sbjct 997 GCC-GCGGTCGAGGCCG-ATGCCGACTGGACCCTGACCTTCGCCGGCCAGCCCTACGGGA 1054 Query 4323 CGAGGTCGACCCCAACGAGCTGTGGGACGCTGTCATGCGCTCCACCT--GGGACTGGGCC 4380 || || | | | || |||||||||| ||||||| | |||| | ||| | | Sbjct 1055 CGCGGCAGGCGCGGGCG--CTGTGGGACGGCATCATGCGTGCGACCTACGAGACCAG--C 1110 Query 4381 GAGCCGGGCGTCCTGTTCATCGACACCATCAACCGCATGAACAATCTCTGG--TACTGCG 4438 |||||||| || | || ||||||| |||||||| ||| | | |||| ||||||| Sbjct 1111 GAGCCGGGTGTGATCTTTATCGACAGGATCAACCGGCTGA--ATCCCCTGGCCTACTGCG 1168 Query 4439 AGGAGATTGCGGCCACCAACCCGTGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCC 4498 | || || ||||| ||||| ||||| |||||||||||||| || | ||||||||| | Sbjct 1169 AAGACATCCGCGCCACGAACCCTTGCGGAGAGCAGCCGCTGCCGCCTTACGGCGCCTGTC 1228 Query 4499 TGCTTGGCTCCTTCAACCTGG 4519 |||| ||||| | ||||||| Sbjct 1229 TGCTCGGCTCGCTGAACCTGG 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175917027704600