Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq13327 408 5e-109 seq303 372 4e-98 seq455 86.0 8e-12 >seq13327 Length=3816 Score = 408 bits (452), Expect = 5e-109 Identities = 661/949 (70%), Gaps = 4/949 (0%) Strand=Plus/Minus Query 189701 TATGTTGGTTGGTTTGGTGTACTCATGATTCCATGCTTGCTCGCAGCAGCAGCATGCTTC 189760 ||| | || |||||||| || | ||| | ||| || | ||||| | | || ||| Sbjct 2789 TATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAGTATCGTGTTTC 2730 Query 189761 GTTGTTGCATTTATTGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCA 189820 ||| ||| ||| | || ||||| || ||||| |||||||| || | ||||||||| || Sbjct 2729 ATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGCCAGTTTCA 2670 Query 189821 GGTTCACTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCT 189880 || || ||||| || || || || || || || || || || ||||| ||||||||| Sbjct 2669 GGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTTCAAATGCT 2610 Query 189881 ATTGGTCTACACTTCTACCCAATCTGGGAAGCAGCAACAGTA--GATGAGTGGCTTTACA 189938 |||||| | || || || | | || || || | ||| || || || | || | Sbjct 2609 ATTGGTATGCATTTGTATACGGTGTGAGATGCG--ATGTGTATTGAGGAATGATTGTATA 2552 Query 189939 ATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGG 189998 | || || |||||||| || || | | || ||| | || || | || |||| | | Sbjct 2551 ACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCATATCTTG 2492 Query 189999 GAAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATT 190058 | | |||| |||||| ||| | |||| ||| | ||||| || | || |||| | Sbjct 2491 GTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAGCTTTCT 2432 Query 190059 CAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCAT 190118 | |||||||| | ||||||| || ||||| || || |||||| | || || || || | Sbjct 2431 CTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAGGATCTT 2372 Query 190119 TCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGTATTCCAAG 190178 | || ||||| |||||| |||| || || || ||||||||||||||| | |||||||| | Sbjct 2371 TTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTATTCCAGG 2312 Query 190179 CAGAACATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGTATGTTTGGTG 190238 |||| ||||||||| | |||||||| ||||| ||||| || || ||||| | ||||| | Sbjct 2311 CAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTATTTGGAG 2252 Query 190239 GAGCATTATTCTCTGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAAACAA 190298 || | ||||| ||| |||||||| || | || ||||| || |||| || | Sbjct 2251 GATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTATGACTA 2192 Query 190299 CTGGTTTAGAGTCACAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACATACAACA 190358 || || |||| || ||||| || || || ||||| ||| | |||||||| || | Sbjct 2191 GTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACATATAATA 2132 Query 190359 TAGTAGCTGCTCATGGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAACT 190418 | ||||| || || || ||||| || | || ||||| || | || || || |||| Sbjct 2131 TCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTAATAACT 2072 Query 190419 CAAGAAGTTTACACTTCTTCTTAGCAGTATTCCCTGTAACCTGTGTATGGTTAACATCAA 190478 || | ||||||||||||| | ||| | | || ||| | | || |||||| ||| Sbjct 2071 CACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAACAGCAA 2012 Query 190479 TGGGTATTTGCACAATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTG 190538 |||| ||| | || ||||| ||||| ||||||| ||||| || ||||| || | ||| Sbjct 2011 TGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAATCATTG 1952 Query 190539 ATGCACAAGGTAAAATTGTTCCAACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTA 190598 ||||| |||| | || | | || | |||| | | || | ||||| || || | Sbjct 1951 ATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATCTAGGAA 1892 Query 190599 TGGAAGTAATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 190647 |||||||||||||||| | || || ||||| ||||| ||||| |||| Sbjct 1891 TGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGATTTAGC 1843 >seq303 Length=42796 Score = 372 bits (412), Expect = 4e-98 Identities = 641/927 (69%), Gaps = 29/927 (3%) Strand=Plus/Minus Query 190904 GGAACTACATTTGTTACTAGTTGGTATACACATGGAATTGCATCTTCATACCTTGAAGGA 190963 || ||||| || || || ||||||||| | ||||| | |||||| || || ||||| Sbjct 27602 GGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGCTATCTAGAAGGT 27543 Query 190964 GCAAACTTTTTGACAGCAGCAGTATCCACACCTGGTGATGCTATGGGTCA-TAGTTTATT 191022 || ||||| || || || |||||||| || | | || ||||| || | | || || Sbjct 27542 TGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGGCACTCGCTT-TT 27484 Query 191023 ATTCTTATGGGGTCCAGAGGCACAAGGTTCATTTGTTCGTTGGTTACAAATTGGTGGACT 191082 ||| || ||||| || || || || || ||| |||| ||| |||| || | Sbjct 27483 ATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAAGTTGGAGGTTT 27424 Query 191083 TTGGAACTTTGTAGCACTTCATGGTGTATTTGGTCTCATAGGATTCATGTTACGTCAGTT 191142 || || ||| | || ||||||| || || | |||||| ||| | || || Sbjct 27423 ATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTTTGTTTAAGACAATT 27364 Query 191143 TGAAATTGCAGGATTGGTGGGTATTAGACCTTACAATGCTCTTGCTTTTTCTGCTGTCAT 191202 |||||||||| | || ||| || | || || ||||| ||||||| | | | || Sbjct 27363 TGAAATTGCAAGGTTAGTGCAGGTTCGTCCATATAATGCAATTGCTTTCACCGGTCCAAT 27304 Query 191203 AGCAGTTTTCACAAGTGTATTCTTAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGC 191262 |||||||| | ||| || ||||| ||||| | ||||| ||||| || ||||| Sbjct 27303 TGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGAGTTGATTTTTTGC 27244 Query 191263 ACCTTCATTTGGAGTTGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAA 191322 ||| |||||||| || || || ||||||| | | |||||| ||||||| || || || Sbjct 27243 ACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTCAAGGGTTTCATAA 27184 Query 191323 TATTACACTCAACCCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACT 191382 ||||| || |||||||| |||||||| || ||||||||| |||| || || ||| | Sbjct 27183 CTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAGGAGGTGCGTTATT 27124 Query 191383 ATGTGCCATTCATGGTGCTACAGTACAGAACACCTTGTATGAGGACTCAAGCATCTATAC 191442 | |||||| ||||| || || ||||| || |||| | |||| Sbjct 27123 GTCTGCCATCCATGGAGCGACTGTACAAAATACCT------------------TATATAA 27082 Query 191443 AGATGGTCAAGT-TCAAAGTACAACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAA 191501 ||||||| || || | || |||||| | || ||| ||||| || || || | Sbjct 27081 AGATGGT---GTGTCGTATGAC-ACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGA 27026 Query 191502 CTTATTCTATGATCACTGCAAACAGATTCTGGTCACAGATATTTGGTATTGCATTCTCTA 191561 ||||||| ||| | || ||||| | || || || ||||| ||||| | || || |||| Sbjct 27025 CTTATTCAATGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTA 26966 Query 191562 ACAAAAGATTTCTACACTTCTTGATGTTGTTTGTTCCTGTAATGGGAATGTGGACATCAT 191621 |||| | | |||| ||||| ||||| || || || |||| || | || || || Sbjct 26965 ACAAGCGTTGGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTG 26906 Query 191622 CAATAGGTATTGTAGGTCTTGCACTTAACTTAAGAGCATATGATTTTGTATCTCAAGAGA 191681 | | || || || ||||| || | || ||||| ||||| |||||||| ||||||||| Sbjct 26905 CTTTTGGGATGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGT 26846 Query 191682 TAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTATACTAAGAACATTCTTCTTAATG 191741 || ||||||| ||||| || || || ||||| || ||||| || || || | ||||||| Sbjct 26845 TACGAGCAGCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATG 26786 Query 191742 AAGGTATGAGAGCATGGATG--TCTTCAGTAGACCAACCTCATGAGAACTTTGTGTTCCC 191799 |||| || | || || ||| | | ||| |||||||||||||| || || | ||||| Sbjct 26785 AAGGAATCCGTGCTTGAATGGCTATGCAG--GACCAACCTCATGAAAATTTCATTTTCCC 26728 Query 191800 AGAGGAAGTTCTACCTAGAGGAAATGC 191826 |||||||||| ||||| | |||||||| Sbjct 26727 AGAGGAAGTTTTACCTCGCGGAAATGC 26701 Score = 132 bits (146), Expect = 6e-26 Identities = 351/534 (66%), Gaps = 4/534 (1%) Strand=Plus/Minus Query 186513 TAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTACAACTT 186572 |||| |||| |||||| ||||| |||||||| || || | || | ||||| ||| || Sbjct 16292 TAGGGCCTGGTGATTTTTTAGTCCATCATGCCATCGCTTTAGGTCTTCATACGACAGTTT 16233 Query 186573 TAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATAAGAAAG 186632 | || | | ||||| || | || ||||||| || | || ||||| || | | Sbjct 16232 TGATTTTGATAAAGGGAGCTATTGACTCTAGAGGGTCGCGGTTTATGCCAGACAAACAGG 16173 Query 186633 ATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCTG 186692 ||| ||||| | |||||||||||||| ||||| |||| || |||||||| | || | Sbjct 16172 CTTTTGGATACACCTTCCCTTGTGATGGGCCAGGTCGAGGCGGGACTTGTGACATCTCAG 16113 Query 186693 GTTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGGCAGATT 186752 || ||| ||| ||||| || |||| || |||| ||||| | ||| | | Sbjct 16112 CCTGAGATAGTTTTTATCTAGCTATGTTTTGAATGCTCAACACAATTGGATGAGTTACAT 16053 Query 186753 TTTATTGGCACTGGAAGAACCTTGCTAGTTGGCAAGGTAATCAGGCACAATTCAATACAT 186812 ||||||| || || || | | ||| || ||||| | ||| || || Sbjct 16052 TTTATTGACATTGAAAACATTTAGCTTTATGAGGAGGTACAAATCGTTTATTTGATGAAT 15993 Query 186813 CAGGAACATATCTTATGGGTTGGTTCAGAGATTATCTCTGGGCGAATAGTGCGCCTGTAA 186872 | | || ||| |||||||| | ||||| ||| | || ||| | | ||| Sbjct 15992 CTTCAGTATGTCTCATGGGTTGACTAAGAGACTATTTGTGATTAAATTCTTCAAAACTAA 15933 Query 186873 TCACAGGGTACAC--ACCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTT 186930 | || || || | | ||| | || | ||| || || ||||| || || Sbjct 15932 TTTATGGATATACTTCCGAAACAGTAAGCATCA--ACTCGGTTTGAGCATGAGCCTTTTT 15875 Query 186931 GTTTGGTCATTTAGTTTGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTG 186990 || |||||||||||||| || ||||| ||||||||| | |||||||| | || ||||| Sbjct 15874 ATTGGGTCATTTAGTTTGAGCCACAGGGTTTATGTTCTTAATTTCTTGACGTGGATATTG 15815 Query 186991 GCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAAAGAACTCCAATAGCAAA 187044 |||||||||||||| || | | ||| || ||| || | || || || || || Sbjct 15814 ACAAGAGTTAATTGAAACCTTAGTTTGAGCTCATGAACGCACCCCGATTGCCAA 15761 >seq455 Length=46940 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 182513 ACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGATGTATTAGAAATGGTT 182572 || || || || || || |||||||| ||||||||| || ||| |||| ||| | Sbjct 5627 ACATGTATAGGCTGTACTCAATGTGTTCGGGCTTGTCCTACTGAAGTACTAGATATGATG 5568 Query 182573 CCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGAACTGAGGATTGTGTA 182632 |||| ||| || || | ||||| || | ||| || |||||||| | Sbjct 5567 ACTTGAGATCATTGTCGCGCTCAACAAATCGCGTGTTCAGATACGCTACAGGATTGTATT 5508 Query 182633 GGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTAAGTATTCGTGTTTACTTG 182692 || ||||| | |||||||| ||||||||||| || ||||||||||||||||| | || Sbjct 5507 GGCTGTAAACGTTGTGAAACTGCATGTCCTACTGATTTTTTAAGTATTCGTGTGGAGTTA 5448 Query 182693 GGTGCAGAAA 182702 || |||||| Sbjct 5447 GGGACAGAAA 5438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630269399300400