Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq10665 188 2e-43 seq1671 174 5e-39 >seq10665 Length=3382 Score = 188 bits (208), Expect = 2e-43 Identities = 250/344 (73%), Gaps = 10/344 (3%) Strand=Plus/Plus Query 39416 CGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCG 39475 ||||||| | | | ||| |||| |||||| |||||| ||| | ||||||||||| Sbjct 2258 CGGGCCTGCAGCTTACCGAACGTAATGATCTGAGCGACCCGGTCCCGCCCGTACTTCTCC 2317 Query 39476 GTGACGTACCGGATCACGTCGCCACGGCG--ACGGTCATCGAAGTCGATGTCCACGTCGG 39533 |||||| ||||||| ||| | ||||| | | || |||||||||||| | ||| | Sbjct 2318 TGTACGTACTGGATCACTTCGTCCCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCG 2375 Query 39534 GCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAG---CCCGTGAGGGATGG 39590 |||| ||||||||||| || || |||||||||||||| | || || | |||| | Sbjct 2376 GCATCGAGACGCGCTCGGGATTGAGGAACCGCTCGAACAGCAGGTTCCAG---CGGATCG 2432 Query 39591 GGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCC 39650 | || |||||||||||| || | | ||| |||||||||| || | ||||| |||| Sbjct 2433 GATCGAGGTCGGTGATCTTCAGCGACCAGGCGACCAGCGAGCCGGCGCCCGAGCCGCGCC 2492 Query 39651 CAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGA 39710 | ||||||||| | ||| | ||| ||||| ||||||||| ||||||| |||| Sbjct 2493 CGGGGCCGACCGGTATGCCGCGATTCTTGGCCCACTGGATGAAGTCCGCGACGATCAGGA 2552 Query 39711 AGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAG 39754 |||| ||||||||||||||| ||| | | | ||||||| Sbjct 2553 AGTAGCCGGGGAACCCCATCTGGACGATGACCCCCAGCTCGTAG 2596 Score = 132 bits (146), Expect = 2e-26 Identities = 400/608 (66%), Gaps = 46/608 (8%) Strand=Plus/Plus Query 38362 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 38421 |||||||| | |||| |||| | || || ||||| ||| ||||| ||||||||| | Sbjct 1249 GGCCGCCAGGAACTCCACCGGATGGTTCGCCTTCATGTAGGCCGTCTGGTAGGCGACCAA 1308 Query 38422 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38481 | || || || | |||| |||||||||| |||| || ||||| ||| || || Sbjct 1309 GGCATAGGCGGCGGCATGCGACTTGTTGAAGCCGTAGCCCGCGAACTTGGCGACCAGATC 1368 Query 38482 CCACACCGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTC-----GCTTGCTCCCTTCTGG 38536 | | |||| || ||| | | | | ||| ||| | || ||| ||| | Sbjct 1369 GAAGATCGCC--GA-GGCCGTCTTCTCG--GCCACGCCCTTGGTGCCTGCGCCCGAGACG 1423 Query 38537 AAGTTCACGAACTCCTTGGCCAGCACCTCGG--GCT-TCTTCTTGCCCATGGCGCGACGG 38593 ||| || || || ||| || ||||| || |||||||||||||||||||||| Sbjct 1424 AAGATCTCGCGCTG---GGCATCCATCTCGGAGGCGATCTTCTTGCCCATGGCGCGACGC 1480 Query 38594 AGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGC 38653 || |||||||| || || |||| |||||||| ||| || || | ||||| Sbjct 1481 AGCAGGTCGGCGCCGCCCAGACTGTAGCCGGCCAGTTCCTGGGCGATCTGCATGACCTGT 1540 Query 38654 TCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACC 38713 ||||||||||| |||| |||||||||| | ||||||| |||||| | || Sbjct 1541 TCCTGGTAGATCATGATCCCGAAGGTCTCGACCAGGAT---------CGGCTC--CAACG 1589 Query 38714 TCGG-----GGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCG 38768 |||| | | | ||||| |||||| || ||| |||||| | | || | | Sbjct 1590 TCGGATAGAGATAGTCCGGCG---TCTCCT-CT--CCGGCCTTGCGCCTGATGAAGCTGG 1643 Query 38769 TG-TGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCC 38827 | || | ||||||| || || || || || | || | |||| || |||| Sbjct 1644 GGATG-------TTCTCCATCGGGCCGGGCCGATAGAGGGAGACCATGGCGATGACGTCC 1696 Query 38828 TCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGG 38887 |||||| |||||||||| || ||| || | |||||| || || || |||||| Sbjct 1697 TCGAACCGGTCCGGCTTGAGTTTGCGCAGGGCGTCGCGCATGCCGGAGCTTTCCAGCTGG 1756 Query 38888 AACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGG 38947 |||||| | ||||||||| | |||| | | ||| | | ||| ||| |||||||| Sbjct 1757 AACACCCCCACCGTGTCGCCGCGCGCCATGACCCGGTAGGCCTCGGCGTCGTCCAGCGGC 1816 Query 38948 ATGTTCTC 38955 | | |||| Sbjct 1817 AAGGTCTC 1824 >seq1671 Length=6144 Score = 174 bits (192), Expect = 5e-39 Identities = 205/276 (74%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 39442 GATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39501 |||||| ||||| | ||||| ||||||||| || |||||| |||||||| ||| | || Sbjct 4479 GATCTGGGCGACGTGGTCGCGGCCGTACTTGTCCTGGACGTAGCGGATCACCTCGTCGCG 4538 Query 39502 GCGACGGTCATCG---AAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAG 39558 ||| ||| | | ||||||||||| | ||||||||| || |||||||| || || || Sbjct 4539 GCG---GTCCTGGCAAAAGTCGATGTCGAAGTCGGGCATCGACACGCGCTCGGGATTGAG 4595 Query 39559 GAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTA 39618 ||| |||||||| | || ||| | | |||||||||||||||||| ||| || | Sbjct 4596 GAAGCGCTCGAACAACAGGCCGAAGCGCAAGGGGTCCAGGTCGGTGATGGTGAGCGCCCA 4655 Query 39619 CGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTT 39678 ||| ||| ||| || || | || |||||||| || |||||| | | ||| | ||| Sbjct 4656 GGCGACCACCGAACCGGCACCCGAACCACGCCCCGGCCCGACCGGGATATCGTGCGACTT 4715 Query 39679 CGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTA 39714 ||||| ||||||||| || |||| |||||||| Sbjct 4716 GGCCCACTTGATGAAGTCCGCAACGATCAGGAAGTA 4751 Score = 104 bits (114), Expect = 7e-18 Identities = 222/325 (68%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 38362 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 38421 ||| || ||| | ||| |||| | || | |||||| || ||||| | ||||| | || Sbjct 3444 GGCGGCGATGAATTCGACCGGATGGTTGGCCTTCAGATAGGCCGTCTGATAGGCCACCAG 3503 Query 38422 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38481 |||| | || ||||||||||||||||| |||| |||||||| ||| || ||| Sbjct 3504 GGCGTAGCCGGCGGAGTGCGCCTTGTTGAAACCGTAGCCGGCGAACTTGTCGACCAGGTC 3563 Query 38482 CCACACCGCCCGGATGGCAGCG-TCCGAGTA---GCCTCGCTCGCTTGCTCCCTTCTGGA 38537 | || ||| ||| ||| ||| | |||| | | || ||||| || Sbjct 3564 GAAGACGTA--GGA-GGC-GCGATCCTTCTTCACGCCTTTGGCCATGGCGCCCTTTACGA 3619 Query 38538 AGTTCACGAACTCCTTGGCCAGCACCTCGGGCTT---CTTCTTGCCCATGGCGCGACGGA 38594 || | || || ||| || ||| | ||| |||||||||||||||||| || | Sbjct 3620 AGATGTCGCGCTG---GGCATCCATCTCCGCCTTGATCTTCTTGCCCATGGCGCGGCGCA 3676 Query 38595 GAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCT 38654 | ||||||||||| ||||| ||||| |||| | || ||| || || | |||||| | Sbjct 3677 GCAGGTCGGCCTGCCCGAGCGTGTAGTCGGCAAAGACCTGGGCGATCTGCATCACCTGTT 3736 Query 38655 CCTGGTAGATGATGAGCCCGAAGGT 38679 |||| |||||||||| ||| |||| Sbjct 3737 CCTGATAGATGATGACGCCGTAGGT 3761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159960870933500