Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq37644 156 1e-32 seq303 122 2e-22 seq105608 111 4e-19 seq9473 111 4e-19 seq8271 89.7 1e-12 seq56386 87.8 4e-12 seq113736 84.2 5e-11 seq4610 84.2 5e-11 >seq37644 Length=6317 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | | |||| |||||||| || | | |||||| |||| | ||| Sbjct 4553 ACGAAGCCGAAGAACCAAGCGGAGGGTGGATTCCTTCTCAATATTGTAGTCGGAGAGAGT 4494 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||| || || ||||| || ||||||||||||| || || || ||||| | || Sbjct 4493 TCGCCCATCCTCAAGTTGCTTGCCTGCGAAGATAAGTCTCTGCTGATCAGGCGGGGTCCC 4434 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || |||| ||||| ||||| || | ||| || | ||| || ||||| Sbjct 4433 TTCTTTGTCTTGAATTTTTTCTTTCACCGCTTCAATTGAGTCGGAAGGTTCAACATCTAA 4374 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTT 225722 |||| |||||| || |||| |||||||| | | | |||||| | | ||| Sbjct 4373 AGTGACCGTCTTCCCGGTCAGAGTTTTTACGTAAATCTGCATTCTCTTGTT 4323 >seq303 Length=42796 Score = 122 bits (134), Expect = 2e-22 Identities = 105/129 (81%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 |||||||||| ||||| || ||||||||||||||||| |||| |||||| ||| | | Sbjct 40536 TGGTAAGATTTTTTGCTTTGCATCAAATTAAACCACATGCTCCGCCGCTTGTACGAGCCC 40595 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGC 7854 |||||| || |||||||||| | ||||||| |||| | |||||| ||| || ||| || Sbjct 40596 CCGTCAATTCCTTTGAGTTTCACCCTTGCGAGCGTACTCCTCAGGCGGAGTACTTATTGC 40655 Query 7855 GTTAGCTTA 7863 ||||||||| Sbjct 40656 GTTAGCTTA 40664 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAA-AGGGCAG 6825 |||||| |||| | |||||||||||||||| | ||||||||| |||||| | ||||| Sbjct 41239 TGAGAGGATGACCCGCCACATTGGGACTGAGACACGGCCCAAA-CTTCTACGGAAGGCAG 41181 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGA 6860 ||||| ||||||| |||||||||||||| ||| Sbjct 41180 CAGTGAGGAATATTCTGCAATGGGCGAAAGCCTGA 41146 >seq105608 Length=359 Score = 111 bits (122), Expect = 4e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | | Sbjct 123 GGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 182 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA-ATATTTACGCG 7855 ||||| |||||||||||||||||||||||| |||| | | |||| ||| | || | ||| Sbjct 183 CGTCAATTTCTTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGAGAGCTTAATGCG 242 Query 7856 TTAGCT 7861 |||||| Sbjct 243 TTAGCT 248 >seq9473 Length=1265 Score = 111 bits (122), Expect = 4e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || || ||||| ||||| || ||| Sbjct 1255 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGGGGAATCCCCTCC 1196 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||||||| ||| || ||||| | ||| |||| ||||| || | ||| Sbjct 1195 TTGTCCTGGATCTTTGCCTTGACGTTCTCGATAGAGTCAGAGGGCTCCACATCGAGAGTG 1136 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| || || | ||| || | ||| | |||||||| Sbjct 1135 ATCGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATTTT 1095 >seq8271 Length=1924 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | | |||||||||||| || |||||||| || || |||||| Sbjct 1242 TTCTGGATGTTGTAGTCAGAAAGAGTTCTCCCATCCTCGAGCTGCTTGCCCGCAAAGATA 1301 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || || ||||| || || || |||||||| |||||||| Sbjct 1302 AGGCGCTGCTGATCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 1345 >seq56386 Length=466 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||||||||| || |||| ||||| || | || ||||||||||| Sbjct 354 AGCACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGTTCTCCCATCC 413 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || |||||||| || || ||||| || || || || || || ||||| || || Sbjct 414 TCAAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGATCAGGGGGAATTCCCTC 466 >seq113736 Length=463 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||||| || |||| ||||||||||| |||||||||||| ||| || |||| | || ||| Sbjct 286 ACAGACCAGGGGGTGGCGACTGTTTATTAAAAACACAGGGCTCTGCGAAGTCGCAAGACG 345 Query 372690 ATGTATAGGGTCTGAC 372705 | |||||||||||||| Sbjct 346 ACGTATAGGGTCTGAC 361 >seq4610 Length=4342 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||| | |||| ||| ||||||||||||| ||||||||||| | | | Sbjct 1185 TGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 1126 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851 |||||| || |||||||||| | |||||| |||| | | ||||||| | | ||| Sbjct 1125 CCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGGGACACTTA 1070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190289878602860