Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10895 279 7e-70 seq83140 89.7 7e-13 >seq10895 Length=16309 Score = 279 bits (308), Expect = 7e-70 Identities = 1006/1567 (64%), Gaps = 19/1567 (1%) Strand=Plus/Minus Query 77430 GTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAA 77489 ||||| ||||||| | || | || | || ||| ||| ||| || || | || Sbjct 11600 GTTTCAAAAATCTCTTGGTTCAATTCCTTGGCCTCATCACTGGTAAAGGGCAAACGCAAC 11541 Query 77490 AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 77549 | |||||||| |||||| | ||| || ||||| | ||| || || ||||| | | ||||| Sbjct 11540 ATAATAAAGGTATCTGCCAGTCCTTGGACTCCCAAACCTATTGGCCTATGGCGCATATTG 11481 Query 77550 GAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTA 77609 ||| ||| ||||| | || || ||||| | || || | |||| || || | Sbjct 11480 GAATTTTCCGCTTCCTTTACGGGGTAGTAATTCCTATCAATGACCCTATTAAGGTTCTTG 11421 Query 77610 ACAACTACTTT---AACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATAACA 77666 || ||| |||| | | | || || |||||| | || || ||||| Sbjct 11420 GTCACCCGTTTTGTAACCTTGAACAATTCCTTGTGA---TCAAATTTGCCCCCTTTAACA 11364 Query 77667 AACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATAT 77726 |||||| | ||||||||| || | |||||||| ||||| |||| | | || |||| Sbjct 11363 AACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGGGGAGGTATAT 11304 Query 77727 TGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTC 77786 | | |||||||||||| ||||| | || |||||| |||| || | || ||||| Sbjct 11303 TCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTTCTGATTGCTT 11244 Query 77787 TTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCG 77846 || |||| | ||||||||||| ||| | || || || || |||||||| ||||| Sbjct 11243 TTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAATCTGGGATTCC 11184 Query 77847 ATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTC-TCTT-- 77903 | || || ||| | | || || |||| | | |||| | | | || ||| Sbjct 11183 AATATTTTTTCCCATAAATCCCTGGCCTTTACCGT---TTTGCGACCCTTATCCTCTGCC 11127 Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 ||||||| |||||| ||||||||| || | | | |||||| || ||| Sbjct 11126 TCATATTTCAAATATAGTTTTTCAAATTCCTCACTGTGATTTGAAAACAATCCTGGACAT 11067 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 ||||| |||||||| || | ||| || ||| ||| || || ||||| || | ||| Sbjct 11066 TCATTGGGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGCGCTTCATGAACAAATCT 11007 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT 78083 || ||||| | || || ||||| |||| | |||||| ||||| ||||| Sbjct 11006 GGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGTGGTTCTTC 10947 Query 78084 TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACT 78143 || | || | ||| || | |||||| | |||||| || |||| ||| || || | | | Sbjct 10946 TTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGGCAAAACTT 10887 Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAAC 78203 || ||| || ||||| ||||| | || | || |||| |||| | || || | | Sbjct 10886 CCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATACCCTTAGC 10827 Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGA 78263 || || | |||||| || || || ||||| || || | ||||| ||| | || ||| Sbjct 10826 ATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCGTAGCCCGA 10767 Query 78264 ATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTC 78323 | ||| |||||| | || ||||| || || | || ||| ||| | ||| Sbjct 10766 ACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGGTCTGCTTC 10707 Query 78324 AATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGAC 78383 || || ||||| ||||| || |||||||| ||| ||||| | || || ||| ||| Sbjct 10706 AAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGCAGGAGGAC 10647 Query 78384 ATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTT 78443 || || | | ||||| | || || | || || | |||||| || || ||||| Sbjct 10646 ATCTGCGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGGGTGAAATATTTT 10587 Query 78444 TCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGA--TGAATTCCTA 78501 | || | || | || ||||| || || || || || || ||| | || ||||| | Sbjct 10586 TTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATATC--ATTTAAGTGGATTCCAA 10529 Query 78502 CCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACA 78561 |||| || ||||||||||||||||| || | ||| | |||| || | || | | Sbjct 10528 CCGCAACGCGCATCAACATATGCTGGGGCCGTTCGGCTATCTTCCCGTTCAGCTTAAGGA 10469 Query 78562 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAA 78621 || ||| ||||| || || || || || || | |||| ||| || | | ||| | Sbjct 10468 GATAGGATCGCTCCAAGGTCTTGAAGCCGAAGTAATCGTATCCAAAATCACGATTGTATA 10409 Query 78622 TAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTAGTTGAAA 78681 | ||| |||| ||||| || | || || || | | ||| | |||| Sbjct 10408 TGATAGTCGAATCCAGTTTTTCCGAATTTTCGGAAATTACCTTATAGACCTCATCGGAAA 10349 Query 78682 TAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACAT 78741 || || | | | ||| || | ||||| | ||| | | ||||| | ||| | Sbjct 10348 GAAGCGGGGCTTTTTTACCCGTTCTGGGATTTATATACTCGTACAAATCCTTCATGGTCT 10289 Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 | ||| |||||| || | ||| |||| ||| || || | || | || || | Sbjct 10288 CGGAAAAGGATTTTTTGGTATTCTTATGTAAATTGGAAACGGAAATACGAGCGGCCAATT 10229 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 | |||||||| ||||| || || || || || || || || ||| | || | Sbjct 10228 TTGCATAATCCGGATGCGTAGTGGTCATGGTAGCAGCCTGCTCGGCGGCCAAATTGTCCA 10169 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTTTGACAG 78921 |||| ||| || || |||| ||| ||||| | || || ||| || | ||| | | Sbjct 10168 ACTCCGAAGTGGTAACACCATCATAAAGTCCCTCTATTACCCGCATAGCCACTTTTATGG 10109 Query 78922 GATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATGTGATTTTAT 78981 | ||||| | || ||| | |||||||||| |||||| | | | ||||| |||| Sbjct 10108 GGTCTACCAGTTC---GTTGAGGCCATAACATAGTTTTCTGACCCTTGCCGTGATCTTAT 10052 Query 78982 CAAATAT 78988 | || || Sbjct 10051 CGAACAT 10045 Score = 190 bits (210), Expect = 3e-43 Identities = 600/917 (65%), Gaps = 21/917 (2%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 |||||| || || || | ||| || || ||||| ||||| || | | ||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 |||||||||||||||||||| | |||||| | ||||| | || | ||| | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCAACCAA 9712 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || || || | || ||||| | |||| |||||| || ||||| || || || Sbjct 9711 TAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAATGAG 9652 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | || ||||| | ||||||| |||||| |||| ||| | |||| || || Sbjct 9651 GCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAGAAT 9592 Query 48089 CGATGTTACCGTTTCCT----CACTTGGTGGATACAACAAATGTTTAAACAT-TAAACAT 48143 | ||| | | | |||| ||| | || || ||| || || || | ||| Sbjct 9591 CTGTGTAATCCTCTCCTTGGGCACCTTGTTGAC-CAAGTGGTGGTTGTGCAAATGAACG- 9534 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 || |||| ||||| | |||||||| | ||| ||||| || ||||| || | ||| Sbjct 9533 GCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACCCG 9474 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||||| || | ||| || | |||||| || | |||| || |||||||| || Sbjct 9473 GGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAATC 9414 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCAC 48323 ||||| || || ||||| ||| | | || || | |||| | | | ||||| Sbjct 9413 CCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGG---GGAATCAATCCAT 9357 Query 48324 CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 | | |||||||| ||||| ||||| | || | | || ||||| | ||| || Sbjct 9356 CTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAAAGG 9297 Query 48384 AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 | ||||||||| || || || || || || ||||| || || || ||||||| Sbjct 9296 ATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCGGAA 9237 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 || || || || || ||||| ||||||||||| | | || || | || || Sbjct 9236 TGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATATTGGACT 9177 Query 48504 TCCGT-ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | ||||||| || |||||||| |||||||| || ||||| || |||||||| Sbjct 9176 TCGTTCACAAAAT-TCTCGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAAAAA 9118 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA---TTCCAGTCATT 48619 || || | |||||| ||||| || ||||| | | | | |||| ||||||||| Sbjct 9117 GGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTCA-- 9060 Query 48620 GATATCTTTTGA--TATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 |||| | ||| || ||| | || || || |||||||| | ||||| |||||| Sbjct 9059 GATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTTG 9000 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT-T 48736 ||| | ||| | ||| | || || ||||| || |||||||||| ||||| Sbjct 8999 TACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTATCCTTATTTTCC 8940 Query 48737 TGCAAGGATAGGTTCCA 48753 ||||| ||||| |||| Sbjct 8939 TGCAA-AATAGGCTCCA 8924 >seq83140 Length=1468 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| || || ||||| ||| || |||||||| || || ||||||||||| | | Sbjct 1193 TCAAACTCCTCCCCCCAGCATTCAGACAGCCCAGGGCACTCGTTCGGGCACATCAACGTC 1252 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||||| || || ||||| |||||| |||| || || ||||| ||||| ||| | | || Sbjct 1253 CAGTCTCCGTCCTCCTTCACTCGTCTCATGAACAGGTCAGGAATCCAGAGACCGAAGAAG 1312 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||| | | ||| || || || || || ||||| | ||| || || || | Sbjct 1313 AGATCCCTCGCTCTGTGCTCCTCCTTGCCGTGGTTCTTCCGCAAATCCAGGAAGTCAAGG 1372 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGC 78136 | || || ||||| || || || || || || Sbjct 1373 AGGTCTGAGTGCCAGGGCTCCAGGTAGATGGC 1404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693395037921600