Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq10665 208 2e-49 seq1671 188 2e-43 seq52713 102 3e-17 >seq10665 Length=3382 Score = 208 bits (230), Expect = 2e-49 Identities = 236/312 (76%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 40082 ACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGAT 40141 |||||| || |||||| |||||| |||| |||||||||||| |||||| ||| Sbjct 2272 ACCGAACGTAATGATCTGAGCGACCCGGTCCCGCCCGTACTTCTCCTGTACGTACTGGAT 2331 Query 40142 CACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40199 ||| ||| |||| || || | || |||||||||||| | ||| ||||| || |||||| Sbjct 2332 CACTTCGTCCCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGC 2389 Query 40200 TCGGGGTTCAGGAACCGCTCGAAGATGAGCC-CGTGCGGGATGGGGTCCAGGTCTGTGAT 40258 ||||| || |||||||||||||| | || | |||| || || || ||||| ||||| Sbjct 2390 TCGGGATTGAGGAACCGCTCGAACAGCAGGTTCCAGCGG-ATCGGATCGAGGTCGGTGAT 2448 Query 40259 GCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACAC 40318 || | ||||||||||||| ||||| ||||||| || ||||| |||||| | Sbjct 2449 CTTCAGCGACCAGGCGACCAGCGAGCCGGCGCCCGAGCCGCGCCCGGGGCCGACCGGTAT 2508 Query 40319 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCC 40378 |||| | ||||||||| ||||||||| ||||||| |||||||||| |||||||| Sbjct 2509 GCCGCGATTCTTGGCCCACTGGATGAAGTCCGCGACGATCAGGAAGTAGCCGGGGAACCC 2568 Query 40379 CAGCTGGATGAT 40390 || ||||| ||| Sbjct 2569 CATCTGGACGAT 2580 >seq1671 Length=6144 Score = 188 bits (208), Expect = 2e-43 Identities = 215/287 (75%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATC 40142 |||||||| |||||| ||||| | ||| |||||||| || |||||| | |||| Sbjct 4468 CCGAAGGTAATGATCTGGGCGACGTGGTCGCGGCCGTACTTGTCCTGGACGTAGCGGATC 4527 Query 40143 ACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40200 || ||| | || || || | || ||||||||||| | ||||||||| |||||||||| Sbjct 4528 ACCTCGTCGCGGCGGTCCTGGCAA--AAGTCGATGTCGAAGTCGGGCATCGACACGCGCT 4585 Query 40201 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGC 40260 |||| || ||||| |||||||| | || ||| | | |||||||||||| |||||| Sbjct 4586 CGGGATTGAGGAAGCGCTCGAACAACAGGCCGAAGCGCAAGGGGTCCAGGTCGGTGATGG 4645 Query 40261 CGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGC 40320 ||| ||||||||| |||||||||| |||| ||||| || || |||||| | Sbjct 4646 TGAGCGCCCAGGCGACCACCGAACCGGCACCCGAACCACGCCCCGGCCCGACCGGGATAT 4705 Query 40321 CGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAG 40367 ||| | ||||||||| ||||||||| || |||| |||||||||| Sbjct 4706 CGTGCGACTTGGCCCACTTGATGAAGTCCGCAACGATCAGGAAGTAG 4752 Score = 87.8 bits (96), Expect = 6e-13 Identities = 261/399 (65%), Gaps = 28/399 (7%) Strand=Plus/Plus Query 39223 TCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGA 39282 |||||||||||||||| ||||| || ||||||||||| || || |||| | || | || Sbjct 3653 TCTTCTTGCCCATGGCGCGGCGCAGCAGGTCGGCCTGCCCGAGCGTGTAGTCGGCAAAGA 3712 Query 39283 TCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGA 39342 ||| || || | |||||| ||||| ||||||| | |||||||| | || Sbjct 3713 CCTGGGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGTAGGTATCCTTCA--- 3769 Query 39343 TCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGA--TCGGCGTGATCGCCTGCTGCCCGTT 39400 | | |||||| |||| | ||| || | || || | || ||| Sbjct 3770 ------CCACCGGCTCGATGGTCTCGTGCAGGAACTCCGGTTGCTCAC-----GCTCGTA 3818 Query 39401 CTTGCGGAGGGCGTAGTTCGTG-TGCGAGCCCACGCCCATCGGACCCGGACGGTACAGCG 39459 |||| | | | || |||| | || |||||||||| || || || |||| Sbjct 3819 TTTGCAGGCGACATACTTCGGGATG-------TTTTCCATCGGACCAGGGCGATAAAGCG 3871 Query 39460 CGACGACGGCGCTGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCA 39519 |||| | ||| |||| ||||| ||| |||| | | | ||| ||||| ||||| Sbjct 3872 CGACCAGAGCGATGATATCCTCAAAGGTGTCGACCCGCGCCTCGCGCAGCAGGCTGCGCA 3931 Query 39520 TCGCGCCGCCG--TCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTA 39577 | || ||| | || | |||||| || || ||| ||||| | | || || |||| | Sbjct 3932 T-GC-CCGAGGATTCAAACTGGAACACGCCGACCGTATCGCCGCGGCTCATCATCTCGAA 3989 Query 39578 GGTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTCGAC 39616 || || ||||||| |||||||||| | |||| ||||| Sbjct 3990 GGCCGCTTCGTCGTCGAGCGGGATGTGCGCCAGATCGAC 4028 >seq52713 Length=37184 Score = 102 bits (112), Expect = 3e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 40094 GATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCG 40153 ||||||||| || | || ||||| || || | | ||||||| || || ||| || Sbjct 6293 GATCTGTGCTACTTGGTTGGCCCCATATTTATTGATGACGTAATCCATGACCCGGCCGCG 6352 Query 40154 TCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAA 40213 | | ||||| || || || |||| ||||||||||| || || || || || ||||| Sbjct 6353 GCCCTCATCATCAAAATCAATATCAATATCGGGCATGGATACCCGATCCGGATTTAGGAA 6412 Query 40214 CCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGC 40273 |||||| || | || ||| | ||||| | || ||| || | |||||| || Sbjct 6413 CCGCTCAAAAAGCAGATCGTATTCAAGTGGGTCTATGTTTGTAATCTTTAAGCAGTAAGC 6472 Query 40274 GACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGAC 40312 |||| |||||||||||||||||||| ||||| || || Sbjct 6473 CACCACGGAACCGGCAGCCGAGCCACGGCCGGGGCCCAC 6511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159861843734320