Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq13327 398 9e-106 seq303 334 9e-87 seq11659 95.1 2e-14 seq5591 82.4 9e-11 >seq13327 Length=3816 Score = 398 bits (440), Expect = 9e-106 Identities = 659/949 (69%), Gaps = 2/949 (0%) Strand=Plus/Minus Query 183225 CCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCAT 183284 ||| || ||| | || |||||||| | | ||| | ||||| | || |||| || Sbjct 2796 CCGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAGT-AT 2738 Query 183285 C-TGCTTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAAC 183343 | || ||||| | ||| || || || || || || || || || || || || || || | Sbjct 2737 CGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGC 2678 Query 183344 CCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTT 183403 | ||| | || || || | || ||||| || || ||||| || || || || || || Sbjct 2677 CAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTT 2618 Query 183404 CCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGC 183463 | || || ||||| | || || ||| | | || || || | | || || || Sbjct 2617 CAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGAT 2558 Query 183464 TGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCT 183523 |||||||||| || ||||||||| |||| || | || ||| | || || || | | Sbjct 2557 TGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCAT 2498 Query 183524 ACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTG 183583 | | ||||||||||| ||||| ||||||| | || ||||||||||| || | || | Sbjct 2497 ATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAG 2438 Query 183584 CTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAG 183643 ||| ||||| ||||| || ||| | ||||| || || || || || |||| |||| Sbjct 2437 CTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAG 2378 Query 183644 GTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCT 183703 | |||||| ||||| ||||| || || || ||| || || |||| ||||| || | Sbjct 2377 GATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTAT 2318 Query 183704 TCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCT 183763 |||| |||||||| || ||| | |||||||| ||||||||| || || || || || | Sbjct 2317 TCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTAT 2258 Query 183764 TCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTG 183823 | || || ||| | || ||||| ||||| || ||| | ||||| || | | || | Sbjct 2257 TTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTA 2198 Query 183824 AAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT 183883 || | ||| ||| |||| || ||||| || || ||||| || ||| | || || | Sbjct 2197 TGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACAT 2138 Query 183884 ACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTA 183943 | || || || || || || |||||||| || ||||| ||||| || | || |||| Sbjct 2137 ATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTA 2078 Query 183944 ACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTA 184003 | || || |||||| | |||||||||||||| ||| || || || || ||||| || | Sbjct 2077 ATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAA 2018 Query 184004 CTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCA 184063 | || | || |||| |||||||| || || || ||||| || || |||||||| || | Sbjct 2017 CAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAA 1958 Query 184064 TCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTC 184123 ||||||||| |||| ||||| | | || || || | | || ||||| || Sbjct 1957 TCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATC 1898 Query 184124 TTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGA 184172 | || |||||||| ||||| |||||||| || ||||| |||||||| || Sbjct 1897 TAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGA 1849 >seq303 Length=42796 Score = 334 bits (370), Expect = 9e-87 Identities = 665/980 (68%), Gaps = 6/980 (1%) Strand=Plus/Minus Query 185997 TTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGT 186056 ||| | ||||| ||||| || |||||| | |||||||| || |||||| |||| | || Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 186057 GGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCT 186116 || || || || || || || || || || |||||| | || || | || ||| Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 186117 TACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGT 186176 || || || ||| ||||||| | || || || || || || || ||| | ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 186177 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAA 186236 || || ||| | ||| ||| ||||| || |||| ||| | | | || |||| ||| Sbjct 27494 CACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAA 27435 Query 186237 CTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATG 186296 |||| || | || |||||| | || | || || |||| | | ||| || Sbjct 27434 GTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTTTGT 27375 Query 186297 CTGCGACAGTTTGAAATCAGTCGTCTCGT--AGGTATCCGTCCATACAATGCCATTGCTT 186354 | |||| |||||||| | | || |||| |||||||| ||||| ||||||| Sbjct 27374 TTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTT--CGTCCATATAATGCAATTGCTT 27317 Query 186355 TTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCT 186414 | | ||||| || || || ||||| ||| || | || || ||| | || || | Sbjct 27316 TCACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGA 27257 Query 186415 CATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCC 186474 || || || || || |||||||| || || || |||||||| | | ||| | | Sbjct 27256 GTTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTC 27197 Query 186475 AAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTG 186534 |||| || || ||||| || ||||||| ||||| ||||||||||| |||||||| | | Sbjct 27196 AAGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAG 27137 Query 186535 GTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATG 186594 | ||||| | |||| || |||||||| | |||||| ||||||| | ||| |||||| Sbjct 27136 GAGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGATG 27077 Query 186595 GCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGA 186654 | | |||| || || || | |||||| |||||| || ||||| | Sbjct 27076 GTGTGTCGTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCAA 27017 Query 186655 TGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTT 186714 |||| || || || | || || || ||||| || ||| | || ||| || ||||||| Sbjct 27016 TGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGTT 26957 Query 186715 GGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCA 186774 || | |||||||| ||| | || || || || | || | || || ||| | |||| | Sbjct 26956 GGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGGA 26897 Query 186775 TTATTGGTCTTGCTCTTAACCTT-CGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCA 186833 | ||||||| || ||||| || | || || || ||||| ||| ||| | ||||| Sbjct 26896 TGGTTGGTCTGGC-CTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGCA 26838 Query 186834 GCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTA 186893 || || |||||||| ||||| ||||| |||||||| ||||| | | |||||||| | Sbjct 26837 GCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAATC 26778 Query 186894 CGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTG 186953 ||||| || ||||| ||| ||||| |||||||| || | || || || ||||| Sbjct 26777 CGTGCTTGAATGGCTATGCAGGACCAACCTCATGAAAATTTCATTTTCCCAGAGGAAGTT 26718 Query 186954 TTGCCAAGAGGCAACGCTCT 186973 || || | || || ||||| Sbjct 26717 TTACCTCGCGGAAATGCTCT 26698 >seq11659 Length=22639 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 165776 TCAAGGGTCA-GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGT 165834 || |||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||| Sbjct 16970 TCTAGGGTCGCGTAGCTCAGCTGGATAGAGCATCTGCCTTCTAAGCAGACGGTCACAGGT 17029 Query 165835 TCGAGTCCTGTC 165846 |||| ||||||| Sbjct 17030 TCGAATCCTGTC 17041 >seq5591 Length=63835 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 19832 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAAGTAATTCGTGGAGGTTCA 19891 ||||||||| ||||||||||||||| ||||||| |||||| ||| || ||||| ||||| Sbjct 49741 GTGGCGGAACTGGTAGACGCGCTGGTTTTAGGTACCAGTGGAGTGATCCGTGGGGGTTCG 49800 Query 19892 AGTCC 19896 ||||| Sbjct 49801 AGTCC 49805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620929756162800