Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq13327 389 5e-103 seq303 345 5e-90 seq4610 96.9 4e-15 seq4451 91.5 2e-13 seq5591 89.7 6e-13 seq1811 89.7 6e-13 seq14782 87.8 2e-12 seq11659 86.0 7e-12 seq2674 84.2 3e-11 seq1150 84.2 3e-11 >seq13327 Length=3816 Score = 389 bits (430), Expect = 5e-103 Identities = 660/950 (69%), Gaps = 6/950 (1%) Strand=Plus/Minus Query 177628 CGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATC 177687 ||||| ||| |||| ||||| || | | ||| | || ||| | | || | |||| Sbjct 2795 CGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAG-TATC 2737 Query 177688 -TGTTTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACC 177746 |||||||| | ||||| || || || || || || || || || || || ||||| || Sbjct 2736 GTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGCC 2677 Query 177747 CGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTC 177806 || | || || || | || || || || || || || || || || || || ||| Sbjct 2676 AGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTTC 2617 Query 177807 TAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCT 177866 || ||||||||| | || || ||| | | || || || | | | || || || | Sbjct 2616 AAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGATT 2557 Query 177867 CTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGG--TATCTATGCA 177924 || || || || |||| |||| ||||| | | || ||| | ||||| || | || || Sbjct 2556 GTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGC-AT-CA 2499 Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 || | ||||||||||| ||| | |||||| |||| |||||||| || || | ||| Sbjct 2498 TATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTA 2439 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 || | |||||| ||||| || |||||||| |||||||| || ||||| || |||| ||| Sbjct 2438 GCTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAA 2379 Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 178104 || ||||| || || | ||||| || || || ||| || ||||||| |||||| || Sbjct 2378 GGATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTA 2319 Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 ||||| |||||||| || ||| | |||||||| ||||||||| || || || || || Sbjct 2318 TTCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTA 2259 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGT 178224 ||||| || ||| | || ||||| ||||| || ||| | ||||| || | | || | Sbjct 2258 TTTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCT 2199 Query 178225 GAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 178284 || | || | ||| | || ||||| || || ||||| || ||| | || || Sbjct 2198 ATGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACA 2139 Query 178285 TACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTC 178344 || || ||||| || || || || |||||||| || || ||||| |||| |||| || Sbjct 2138 TATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTT 2079 Query 178345 AACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTC 178404 || ||||| ||||| | ||||||||||| ||| || || || || || ||||| || Sbjct 2078 AATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTA 2019 Query 178405 ACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 178464 || || | || |||| || ||||| ||||| || || || ||||| |||||||| || Sbjct 2018 ACAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCA 1959 Query 178465 ATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 178524 ||||| ||| | || || | | || || || | | || ||||| | Sbjct 1958 ATCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAAT 1899 Query 178525 CTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGA 178574 || || |||||||| ||||| |||||||| || ||||| |||||||| || Sbjct 1898 CTAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGA 1849 >seq303 Length=42796 Score = 345 bits (382), Expect = 5e-90 Identities = 666/975 (68%), Gaps = 8/975 (1%) Strand=Plus/Minus Query 178881 TTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGG 178940 |||||||| || || || | | || || || || ||||| |||| | || || || Sbjct 27668 TTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGAGGATGA 27609 Query 178941 CTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTT 179000 | ||| || || ||||| || |||||| |||| || | || ||| ||||| Sbjct 27608 TTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGCTATCTA 27549 Query 179001 GAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCC 179060 || || |||||||| | |||||||||||||| || || ||| | | || || || Sbjct 27548 GAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGGCACTCG 27489 Query 179061 CTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGG 179120 || | | | || ||||| |||||||||||| ||| || ||| ||| |||| Sbjct 27488 CTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAAGTTGGA 27429 Query 179121 GGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGG 179180 || |||| |||| | || | || || |||| | | ||| || || || | Sbjct 27428 GGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTT-TGTTTAAG 27370 Query 179181 -CAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGG 179239 || |||||||| ||| | |||| ||||||| || |||||||| || || | || Sbjct 27369 ACAATTTGAAATTGCAAGGTTAGTGCAGGTTCGTCCATATAATGCAATTGCTTTCACCGG 27310 Query 179240 TCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTT 179299 ||||||||| || ||||| ||||| ||| | || |||||| | || || | || || Sbjct 27309 TCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGAGTTGATT 27250 Query 179300 CTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTT 179359 ||||| || |||||||| || || ||||| | || |||| ||| | || || || Sbjct 27249 TTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTCAAGGGTT 27190 Query 179360 CCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGC 179419 || ||||| || || || || ||||| ||||||||||| |||||||| | || || || Sbjct 27189 TCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAGGAGGTGC 27130 Query 179420 ATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCA 179479 || | | |||||| ||||| || || ||| | || || | | | |||| ||| Sbjct 27129 GTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGATGGTGTGTC 27070 Query 179480 ATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTAC 179539 | | || || || || || || ||| ||| ||||| ||||| ||||| || Sbjct 27069 GTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCAATGGTAAC 27010 Query 179540 TGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACA 179599 || || ||||| || |||||||| ||||| | || || || ||||||||| |||| Sbjct 27009 CGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGTTGGTTACA 26950 Query 179600 TTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGG 179659 |||||||||||| || || || || | || | || || ||| |||| || |||| Sbjct 26949 TTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGGATGGTTGG 26890 Query 179660 TCTTGCACTTAACCTT-AGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGG 179718 ||| || ||||| || || || || || ||||| || |||||| | |||| || || | Sbjct 26889 TCTGGC-CTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGCAGCCGAAG 26831 Query 179719 ATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTT 179778 ||||||| ||||| ||||| |||||||| || || | | |||||||| | ||||||| Sbjct 26830 ATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAATCCGTGCTT 26771 Query 179779 GGATGGC--ACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCC 179836 | ||||| ||| || ||||| |||||||| || | || || || ||||| || || Sbjct 26770 GAATGGCTATGCAG--GACCAACCTCATGAAAATTTCATTTTCCCAGAGGAAGTTTTACC 26713 Query 179837 AAGAGGCAACGCTCT 179851 | || || ||||| Sbjct 26712 TCGCGGAAATGCTCT 26698 >seq4610 Length=4342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 |||||||||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2146 AGGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 2205 Query 17917 GTCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 2206 CTCCGATATTCTCCA 2220 >seq4451 Length=5298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 176130 CCCGATGGAACTGAAACTACTTTTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCT 176189 ||||||||||| | || | | ||||| ||| || ||||| |||||||||||||| Sbjct 2304 CCCGATGGAACCAAGACCA---TCGAGTGCAGTGATGACCAGTACGTTCTGGATGCTGCT 2248 Query 176190 GAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCA 176249 ||||| || ||| |||| ||| ||| || ||||||||||| |||| || | || || Sbjct 2247 GAGGAGGCCGGAATTGACCTCCCCTATTCCTGCCGCGCTGGCTCCTGCTCCACCTGCGCC 2188 Query 176250 GGAAAACTCATCTCGGGCACGGTAGATCAAAGC-GATCAATCGTTCCTTGATGATGACCA 176308 || || | |||| || | || || ||| | || || | ||||| ||||| ||| Sbjct 2187 GGCAAGGTTGTCTCCGGATCTGTTGA-CAACTCTGAGCAGACCTTCCTCGATGACAGCCA 2129 Query 176309 GATCGATGCAGGTTTCATTCTGACTTGTGT 176338 | ||| ||| || |||| || || || || Sbjct 2128 GCTCGGTGCTGGCTTCACCCTCACATGCGT 2099 >seq5591 Length=63835 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17705 GGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAAG 17764 |||| ||||||||||| |||||||||||| ||||||||||| ||| | || |||||| || Sbjct 57388 GGGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGCCGCGGGTTCGAG 57447 Query 17765 TCCCTTCAGTCCCG 17778 |||| ||| ||||| Sbjct 57448 TCCCGTCACTCCCG 57461 >seq1811 Length=4487 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 17695 TCAAACGTATGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCG 17754 || |||| ||||| ||||||||||| ||||||||||| ||||||||||| || | || Sbjct 4445 TCCAACGCCTGGGGGTGTAGCTCAGTTGGTTAGAGCGCTGGCCTGTCACGCCAGAGGCCG 4386 Query 17755 AGGGTTCAAGTCCCTTCAGTCCCG 17778 ||||||||||||| ||| ||||| Sbjct 4385 CGGGTTCAAGTCCCGTCACTCCCG 4362 >seq14782 Length=67077 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 158123 GGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGC-GAAGTGAGAGCTTC-CGTG 158180 ||||| ||||||||||| ||| | ||||||||||||| || | |||||||| || |||| Sbjct 40711 GGTGGCCGAGTGGTTGAAGGCACCGGTCTTGAAAACCGGCAGGCGTGAGAGCGTCTCGTG 40770 Query 158181 GGTTCGAATCCCACCCTTTCCG 158202 |||||||||||||||| |||| Sbjct 40771 GGTTCGAATCCCACCCCATCCG 40792 >seq11659 Length=22639 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCC 157482 ||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||||| Sbjct 16981 GTAGCTCAGCTGGATAGAGCATCTGCCTTCTAAGCAGACGGTCACAGGTTCGAATCC 17037 >seq2674 Length=3805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 18374 GGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGGGGTTC 18433 |||| |||||||||||| || | ||||||||||||||| |||||| ||||||| ||||| Sbjct 3436 GGTGCCCGAGTGGTTAAAGGGGACGGACTGTAAATCCGTTGGCTCAGCCTACGTTGGTTC 3495 Query 18434 AAATCC 18439 |||||| Sbjct 3496 AAATCC 3501 >seq1150 Length=48029 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 158205 TCGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGA 158264 |||||| ||||||||| |||||||| ||| ||||||||| ||||| || |||||||| Sbjct 21032 TCGGGGCGTAGCTCAGCCTGGTAGAGTGCCTGCTTTGGGAGCAGGATGTCGGAGGTTCGA 20973 Query 158265 ATCCTATCACCCCGAC 158280 ||||| || ||||||| Sbjct 20972 ATCCTCTCGCCCCGAC 20957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595213796210400