Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq303 416 3e-111 seq13327 374 1e-98 >seq303 Length=42796 Score = 416 bits (460), Expect = 3e-111 Identities = 685/981 (70%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 170631 TTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGC 170690 ||| ||||||| ||||| || ||| | | |||||||| || |||||| | || | || Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 170691 GGCTGGCTTACGGGCACGACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCG 170750 || || || ||| || || || || ||||||||||| | || || || ||| | Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 170751 TACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGT 170810 || || |||||| |||||| | || || ||||| || ||||| ||| || ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 170811 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAA 170870 || || ||| | ||| ||| ||||| || ||||||| ||| || |||| ||| Sbjct 27494 CACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAA 27435 Query 170871 CTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATG 170930 |||| || | || |||||| | || | || || |||| | | ||| || || Sbjct 27434 GTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTT-TG 27376 Query 170931 CTTCGG-CAGTTTGAAATCAGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTT 170989 || | || |||||||| | | || | || | || || |||||||| ||||| Sbjct 27375 TTTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTTCGTCCATATAATGCAATTGCTTT 27316 Query 170990 CTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAG 171049 | | ||||| || || || ||||| || || | || |||||| | || || | || Sbjct 27315 CACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGAG 27256 Query 171050 TTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCA 171109 ||| || || ||||| |||||||| || || || || | || | || ||| | || Sbjct 27255 TTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTCA 27196 Query 171110 AGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGG 171169 ||| || || ||||| ||||||||||| || |||||||||||||| |||||||| | || Sbjct 27195 AGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAGG 27136 Query 171170 CGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGG 171229 ||||| || | ||||| || ||||| | || ||| | ||||| || ||| ||||||| Sbjct 27135 AGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGATGG 27076 Query 171230 TGATCAAGCA-AACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTA 171288 || | | | |||||||| || ||| | | || || |||||||| ||||| | Sbjct 27075 TG-TGTCGTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCAA 27017 Query 171289 TGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTT 171348 |||| || || |||||||| || || ||||||||||| | || || || ||||||| Sbjct 27016 TGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGTT 26957 Query 171349 GGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGA 171408 |||| |||||||||||| | || || || || | || | || | | | |||| Sbjct 26956 GGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGGA 26897 Query 171409 TTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAG 171468 | ||||||| || | ||| | ||||| || ||||| || ||| ||| | |||||| Sbjct 26896 TGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGCAG 26837 Query 171469 CAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTC 171528 | |||||||| || ||||| ||||| |||||||| || || | | |||||||| | | Sbjct 26836 CCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAATCC 26777 Query 171529 GTGCATGGATGGC--ACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGT 171586 |||| || ||||| ||| |||||||| |||||||| || | |||||||||||||| Sbjct 26776 GTGCTTGAATGGCTATGCAG--GACCAACCTCATGAAAATTTCATTTTCCCAGAGGAAGT 26719 Query 171587 TCTACCTCGTGGCAATGCACT 171607 | ||||||| || ||||| || Sbjct 26718 TTTACCTCGCGGAAATGCTCT 26698 >seq13327 Length=3816 Score = 374 bits (414), Expect = 1e-98 Identities = 603/865 (70%), Gaps = 4/865 (0%) Strand=Plus/Minus Query 169466 GCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGT 169525 || || || || || || || || || || || || ||| | || ||||| | || || Sbjct 2711 GCACCGCCAGTAGATATTGATGGAATTCGTGAGCCAGTTTCAGGCTCTCTTCTATACGGA 2652 Query 169526 AACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTAT 169585 || || || ||||| || || || || || ||| || || || ||| | || || ||| Sbjct 2651 AATAATATTATCTCAGGAGCCGTAGTACCGAGTTCAAATGCTATTGGTATGCATTTGTAT 2592 Query 169586 CCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTG 169645 | | || || || || | || ||||| ||||| ||||| || |||| |||| | Sbjct 2591 ACGGTGTGAGATGCGATGTGTATTGAGGAATGATTGTATAACGGAGGACCTTACCAATTC 2532 Query 169646 GTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCC 169705 ||||| | || ||| | ||||| | | || | ||||||||||| ||||| Sbjct 2531 GTTGTACTACATTTCTTAATCGGGGTAGCATCATATCTTGGTCGTGAGTGAGAATTAAGT 2472 Query 169706 TATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCC 169765 || ||| | || ||||| ||||| || | || |||| |||||| || ||||| ||||| Sbjct 2471 TACCGTTTAGGAATGCGTCCTTGAATTTTCGTAGCTTTCTCTGCACCAGTTGCAGCAGCA 2412 Query 169766 TCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTG 169825 || ||||| || || || ||||| | || ||||| || || || || | |||||||| Sbjct 2411 TCGGCTGTATTTCTAGTTTACCCAATCGGACAAGGATCTTTTTCAGATGGAATGCCTCTA 2352 Query 169826 GGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATG 169885 || || || ||||| || |||| |||||| || ||||| || ||||| || ||| | ||| Sbjct 2351 GGAATTTCTGGAACATTCAACTTCATGCTAGTATTCCAGGCAGAGCATAATATCTTAATG 2292 Query 169886 CACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATG 169945 ||||| ||||||||| ||| || || ||||| ||||| || ||| | ||||| || ||| Sbjct 2291 CACCCTTTCCACATGGCTGGAGTGGCAGGAGTATTTGGAGGATCTTTATTTAGTGCTATG 2232 Query 169946 CACGGTAGCCTCGTCACTTCGAGTCT--TGTCCGTGAAACCACCGAGAACGAGTCCCAGA 170003 || || | || || || | | | | || || || | || | || || | | Sbjct 2231 CATGGATCTTTAGTTACATCAACTTTAATTTCTATG--ACTAGTGAAGATGAATCACCTA 2174 Query 170004 ACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTT 170063 | ||||| || || ||||| || ||| | || || || || ||||| ||||| ||||| | Sbjct 2173 ATTATGGGTATAAATTCGGACAGGAATATGAAACATATAATATCGTAGCCGCGCACGGAT 2114 Query 170064 ACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCT 170123 ||||||| || || ||||| |||| ||| || || ||||| ||||| | ||||||| Sbjct 2113 ACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTAATAACTCACGTTCTTTACACTTCT 2054 Query 170124 TCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGG 170183 |||| ||| || || || ||||| ||||| || || || | || | || |||| Sbjct 2053 TCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAACAGCAATGGGAATTAGTACTATGG 1994 Query 170184 CGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGC 170243 | ||||| || || || ||||| |||||||| || ||||| |||| | || ||||| Sbjct 1993 CTTTCAATCTAAATGGATTCAATTTCAACCAATCAATCATTGATGCAGAAGGACGTGTAA 1934 Query 170244 TCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGC 170303 | | || || || | | || ||||| ||| || |||||||| ||||| |||| Sbjct 1933 TTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATCTAGGAATGGAAGTAATGCATGAGC 1874 Query 170304 GTAATGCTCACAACTTCCCTCTCGA 170328 |||| || ||||| |||||||| || Sbjct 1873 GTAACGCGCACAATTTCCCTCTAGA 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591112530208800