Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9473 154 3e-32 seq6360 114 3e-20 seq78829 107 4e-18 seq57105 100 6e-16 seq1398 96.9 7e-15 seq49863 95.1 3e-14 seq118334 91.5 3e-13 seq44056 91.5 3e-13 seq56386 87.8 4e-12 seq6675 87.8 4e-12 >seq9473 Length=1265 Score = 154 bits (170), Expect = 3e-32 Identities = 136/170 (80%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||||| ||| || || || ||| Sbjct 1264 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGGGGA 1205 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||||| || ||| | ||||||| ||| || | || || Sbjct 1204 ATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATAGAGTCAGAGGGCTCCACA 1145 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||||||||||||||| || || | |||||| ||||| ||||||||||| Sbjct 1144 TCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATTTT 1095 >seq6360 Length=14587 Score = 114 bits (126), Expect = 3e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||||||| | |||||||||||||| || |||||||| || ||||| || || | | Sbjct 10735 GACCCCTATCTGAACGTCGATCCGGGCACCATGAGCCCCTTCCAGCATGGCGAGGTCTAC 10676 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCAC 301547 || ||||| || || || |||||||| |||||||| |||||||||||||| ||||| Sbjct 10675 GTCACGGAAGACGGCGCCGAAACCGACCTGGATCTAGGGCACTACGAACGCTTCAC 10620 >seq78829 Length=3911 Score = 107 bits (118), Expect = 4e-18 Identities = 250/368 (68%), Gaps = 28/368 (8%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| | || || ||||| || || ||||||||||| ||| ||| | ||||||| || Sbjct 3322 AAACTTGATCCTTATATTAATGTAGATCCGGGGACCTTGAACCCTTATGAACATGGTGA- 3264 Query 301486 GTGTTC-GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTT 301544 ||| | ||||||||||| || || ||||||||| ||||||| || || ||||| ||||| Sbjct 3263 GTGCTATGTGACGGATGACGGGGCCGAAACCGATTTGGATCTTGGACATTACGAGCGTTT 3204 Query 301545 CACTTCATTAACCCTTAAG-CGTGAAAG-----TAATTTTACGACTGGCCAAGTTTATTT 301598 |||| | | | | | | || |||| | || || || | ||||| Sbjct 3203 ------TTTAAATGTGAGGACATCACAGGCCAATAATGTCACTACGGGAAGAATTTATCA 3150 Query 301599 AAAAGTTATCGAAAATGAACGCGAAGG---TAGCTATCTCGGAAAGACGGTGCAAGTTGT 301655 || || || ||||| ||| |||||| || | | | || ||||| || ||||| || Sbjct 3149 AAGTGTCATAGAAAAAGAA--CGAAGGGGCGAG-TTTTTGGGCAAGACCGTCCAAGTGGT 3093 Query 301656 TCCCCACATCACCGATGAAATCAAAAGAA-GAATTCACATTGCGGCTGAAA------AAT 301708 ||||| || ||| |||| || ||| ||| | || || ||| | ||| ||| Sbjct 3092 GCCCCATATAACCAATGAGAT-AAAGGAACGCATACAGATTCTTGGGAAAAGTGGCGAAT 3034 Query 301709 CAGATATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTA 301768 ||||| |||| |||||||| || || || || ||||| ||||| ||||| | || Sbjct 3033 ATGATATTGTTATCACTGAAATTGGGGGTACTGTTGGGGATATAGAATCCCTTCCCTATA 2974 Query 301769 TAGAAGCG 301776 | |||||| Sbjct 2973 TTGAAGCG 2966 >seq57105 Length=498 Score = 100 bits (110), Expect = 6e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| ||||||||||| || ||||| || || ||| | || || | ||| |||| || Sbjct 479 GGAATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGAGTCAGAAGGCTCC 420 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || |||||||| ||||| || |||| |||||| ||||| ||||||||||| Sbjct 419 ACATCAAGAGTGATAGTCTTCCCGGTCAGAGTCTTGACGAAAATCTGCATTTT 367 >seq1398 Length=10803 Score = 96.9 bits (106), Expect = 7e-15 Identities = 445/694 (64%), Gaps = 33/694 (5%) Strand=Plus/Plus Query 316166 TGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGAT 316225 |||| || |||| ||||| ||||| |||||| | || ||| ||| || || | Sbjct 5211 TGTCCTCTCCGGTGGCATAGCGCCACATGATGTATTCGGCAGGAGTCCAGTCGAGGTGGT 5270 Query 316226 CCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 316285 ||||||||||||||| |||||||| || ||||| |||| ||| | || || || |||| Sbjct 5271 TCTCGATGTGGTGGAAGGCGTGCTGGGCAACGTAGGCAATACGGAGGTTGGGGTGTTTCC 5330 Query 316286 AAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTA-GCACTTTAATGAGAGTACTTTTT 316344 | ||| | ||| || | ||||||| || || | |||| || |||||||| ||| Sbjct 5331 ACACGTTTCCGGAGGTGGGCTCCATCTCACCAGTGAGGCAC-TTGATGAGAGTGGACTTT 5389 Query 316345 CCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGATAC---CTGGGCATTC 316401 || || ||||| || ||||| | | | |||| ||| || || | | | | Sbjct 5390 CCAGCTCCGTTAGGGCCAACGACGGCCACACGGGAGGCGAGGGAGACGAACAGAGAGACC 5449 Query 316402 ACGTTGTCGAAGACCAGTTTGTCCGTCCCAGGATACTTGAAACCCACCCCGCGAAGCTTC 316461 |||| || || | | ||| || || || |||| ||| ||| | | ||| Sbjct 5450 CCGTT---GAGGATCTGCTTGGTGGTGTTGGGGTAGGTGAAGGACACACCGTGCATCTTG 5506 Query 316462 ATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGGGTTCGGGGAA------- 316514 | ||||| |||||| | ||| ||| ||||| | ||||| || ||||| Sbjct 5507 AGAATGGCCTTGTCCTTGGTCTTGACACCGTCGAGGATACCGGGCTCAGGGAAGCCGAAC 5566 Query 316515 -TTTCCACGTAGTCTTCGTC----TCGGCGAGCGTGTAGTA--AC-TTGCAGATTCGGGA 316566 | | ||| || | | | ||| |||| |||||| || |||| | |||| Sbjct 5567 TTCTGAACGAAGGCGGTGGCAGAGGCGGTGAGCTCGTAGTAGGACTTTGC--CTCAGGGA 5624 Query 316567 C-GCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTC 316625 | || ||| |||| | | ||| || || || || | |||||||| ||| || Sbjct 5625 CAGC--CTTGACGAGAGCTGCCAGGTTGCCCTTGTAAGTTTTCAGCTT---TCTGGACTC 5679 Query 316626 GTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCAC 316685 ||| |||||||| ||| ||||| |||||||| || || ||||| || || |||| Sbjct 5680 GTAGTGGATGATGTGAGTGCAGACCTTGTCGAGGAAGCCGGAGTCGTGAGACACCATCAT 5739 Query 316686 ACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCA-GCTCACATTCGACACAG 316744 || ||| || || | ||| ||| ||||| ||| || ||| ||| Sbjct 5740 GGCTGTCACGTTCTTCTGGGAGCACAGCCAGTTCTCGAGCCATGCT-ACGTTCTTGACAT 5798 Query 316745 AAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTG 316804 | |||||||| || || || || | || | | || | | ||||| ||||| | Sbjct 5799 CCAAGTGGTTGGTAGGCTCATCGAGCAAGAGGATATCGGCCTTGATAAGCATGGCGCGCG 5858 Query 316805 CGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAG 316838 | || || |||||||| |||||||| ||||| || Sbjct 5859 CAAGGGCGAGCTTCATCTTCCACCCTCCGGAGAG 5892 >seq49863 Length=10164 Score = 95.1 bits (104), Expect = 3e-14 Identities = 262/396 (66%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 149751 ACATGACCGTTTTCGAGATCGTATCGATCATTCGGCCCGCTTAGGTTCGTGGGCATCGCC 149810 |||||| ||||| ||||| | |||||| || || || || |||||||| | Sbjct 8778 ACATGAGACTTTTCCAGATCAAAATTATCATTGGGTCCATACAGATTAGTGGGCATTACG 8837 Query 149811 GAGACGAAGTTGCATCCGAATTGCTTTCTATAGGCATCGCACATCTCTATCCCCGCAATT 149870 || | ||| ||| ||| ||||| ||||| || || | | || || |||||| Sbjct 8838 GAAATGAAATTGGTACCGTATTGCAAATTATAGCTCTCACATAGTTTAATACCTGCAATT 8897 Query 149871 TTTGCGATCGCGTATGGTTTGTTCGTGGGTTCGAGAGGCCCAGACATAAGATATTCTTCC 149930 ||||| || ||||| || | || ||| ||| || | | || |||||| || ||| Sbjct 8898 TTTGCTATGGCGTAAGGCTCATTGGTGTATTCCAGCACATCGGTCAGAAGATACTCCTCC 8957 Query 149931 TTGATTGGATTAGGCGATTC--TTTCGGGTAAATACAGCTGCTACCGAGAGCGACGAGTT 149988 || ||||| | || | || ||| || ||||| || | || || | | | |||| Sbjct 8958 TTCATTGGCT--GGGGGCTCGATTTTGGATAAATGCATGTACTTCCCAAAAACATTAGTT 9015 Query 149989 TCTTGACGTCGAATTGTTTT-GCAGCG-TGGATGACGTTCGTTTGTATCATCAAATTATC 150046 | || ||| | |||| | || | ||||| || || |||||||||||| || || Sbjct 9016 TTTTTACGCC--ATTGCGATAGCTTTGATGGATTACATTATTTTGTATCATCAGGTTTTC 9073 Query 150047 ATGAATAAAATCGCCACCGAACGAATTATTCGCATGAATACCTCCTACTTTTGCAGCGGC 150106 || | ||||| ||| | | | |||||| || |||||| || || ||||| || || Sbjct 9074 ATAGAGGAAATCCGCACGGTATGTATTATTAGCTAAAATACCCCCGACCTTTGCGGCCGC 9133 Query 150107 GAGAAATACGTATTCAGGAGTTTCCGTTTTGAAAAA 150142 | ||| || ||||||| |||||||| ||||| Sbjct 9134 CAAAAAAACCCATTCAGGTTTTTCCGTTGCAAAAAA 9169 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 43973 CTCGGATTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAA 44032 |||| || | || || || || || || || || |||||||| |||||| | || || Sbjct 10058 CTCGAATCTATCAGGCATCCACTTCCGAATTATATGGAAAGGTACAGGAGGTGCCCCAGT 9999 Query 44033 CAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATT 44092 |||| | || || |||||||| || ||||| |||| ||||| || | |||||||||| Sbjct 9998 CAGAGACCACCCCTTTTTATCCTCGTAGTCCCTATGCCGTGGCAAAAATGTATGCCTATT 9939 Query 44093 GGATTTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCA 44152 ||||| ||| ||| | || | ||||| ||||| | || || |||| || | Sbjct 9938 GGATTACCGTAAACTATAGGGAAGCCTATGGTATGTTTGCCTGCAACGGAATTTTATTTA 9879 Query 44153 ATCACGAA 44160 |||| ||| Sbjct 9878 ATCATGAA 9871 >seq118334 Length=438 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || || | ||||| | ||| |||| ||||| Sbjct 437 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACATTTTCGATGGAGTCGGAAGGCTCGACA 378 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| ||||| || |||| ||| || ||||| |||||||| || Sbjct 377 TCAAGAGTGATAGTCTTGCCGGTCAGAGTTTTCACGAAAATCTGCATATT 328 >seq44056 Length=2137 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || |||||||||||||| | ||||| | ||| |||| || ||||| || Sbjct 424 GTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTCCTGCCTTCCTGGAGCTGTTTGCCT 365 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 |||||||||| || || || ||| || || |||||||||||||| ||||| Sbjct 364 GCAAAGATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATCTT 312 >seq56386 Length=466 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | |||||| || |||||||| | ||| ||| || |||||||||||||||| Sbjct 339 CCGCCTCTCAGGCGGAGCACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 398 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | |||||||| || || || || |||||||| | || || || ||| ||| Sbjct 399 AGCGTTCTCCCATCCTCAAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGATCAGGGGGA 458 Query 282993 ATACCCTC 283000 || ||||| Sbjct 459 ATTCCCTC 466 >seq6675 Length=55675 Score = 87.8 bits (96), Expect = 4e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGA-GCCCGACTCAACATGGAGAAGTGTT 301490 ||||| ||| | ||||| |||||||| || ||| |||| | ||| || || || || | Sbjct 49541 GACCCTTATCTGAACGTGGATCCGGGAACCATGTCGCCCTA-TCAGCACGGCGAGGTCTA 49599 Query 301491 CGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCAC 301547 ||| || ||||| || || || |||||||| || ||||| ||||||||||| ||||| Sbjct 49600 CGTCACCGATGACGGGGCCGAGACCGATCTCGACCTGGGTCACTACGAACGCTTCAC 49656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044771889655260