Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9473 149 2e-30 seq981 111 4e-19 seq37644 104 6e-17 seq57105 87.8 4e-12 seq48996 84.2 5e-11 >seq9473 Length=1265 Score = 149 bits (164), Expect = 2e-30 Identities = 137/173 (79%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| |||||||| ||||| |||||||| ||||| ||||| Sbjct 1095 AAAATGC---AGATCTTCGTGAAGACTCTCACCGGAAAGACGATCACTCTCGATGTGGAG 1151 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||| | |||||||||||||| |||||| |||||||| || || || || || Sbjct 1152 CCCTCTGACTCTATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCC 1211 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || ||||| || || |||||||||||||| |||||||| || || | ||||| Sbjct 1212 GATCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCT 1264 >seq981 Length=20169 Score = 111 bits (122), Expect = 4e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| |||||| | |||||||| || ||| | Sbjct 3944 CAGATCTTCGTGAAGACCCTCACTGGAAAGACGATCTCTCTCGAGGTCGAGCCCTCCTTC 3885 Query 177984 ACCATCGAGAACGTCAAA-CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||||||||| ||| |||||| |||| || ||||| || ||||| || |||||| Sbjct 3884 ACGATCGAGAACGTGAAAGCAAAAG-TTCAAGAAAAAGAGGGGATCCCCCCAAGCCAGCA 3826 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||| | |||||| |||| || ||||| |||||| Sbjct 3825 GCGTCTGGTCTTTTCTGGAAAAGAGCTTGACGATGGGCAGACTCT 3781 >seq37644 Length=6317 Score = 104 bits (114), Expect = 6e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||| ||| |||||||| || || || ||| |||| | || || ||| || ||| Sbjct 4335 CAGATTTACGTAAAAACTCTGACCGGGAAGACGGTCACTTTAGATGTTGAACCTTCCGAC 4394 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || ||| |||| ||||| ||||||||||| | ||| || || ||||| Sbjct 4395 TCAATTGAAGCGGTGAAAGAAAAAATTCAAGACAAAGAAGGGACCCCGCCTGATCAGCAG 4454 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| || || || || || ||||| | ||||| |||| || || | Sbjct 4455 AGACTTATCTTCGCAGGCAAGCAACTTGAGGATGGGCGAACTCTCTCCGACTACAATATT 4514 Query 178104 CAAAAAGAATCAACACT 178120 | || ||||| || || Sbjct 4515 GAGAAGGAATCCACCCT 4531 >seq57105 Length=498 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || ||||| || || || || ||||| || || ||||| Sbjct 367 AAAATGC---AGATTTTCGTCAAGACTCTGACCGGGAAGACTATCACTCTTGATGTGGAG 423 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||| |||| |||||||| || |||||||||||||| || ||||| || || Sbjct 424 CCTTCTGACTCCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCT 483 Query 178035 GACCAGCAACGACT 178048 || ||||| || || Sbjct 484 GATCAGCAGCGCCT 497 >seq48996 Length=1832 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 || || || ||| | |||||||| ||||||||||| | |||||| | || ||||| Sbjct 406 TTTGTCAAGACTTTGACAGGAAAGACGATCACCCTGCAAGTGGAACCCGACGATTCCATC 465 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 | |||||| | |||||||||||| || ||||| || || || ||||| |||| Sbjct 466 CCACATGTCAAAAATTTGATTCAGGACAAGGAGGGAATTCCCCCTGATCAGCAGAGACTG 525 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||| || || ||| |||| || || | | || | ||||| ||| | || | Sbjct 526 ATCTTTGCTGGGAAAAAGCTTGAGGACATTATGTACCTGGATGATTACAACATTCAGACG 585 Query 178110 GAATCAACACTGCATCTTGTTTTG 178133 || || || || ||| | |||||| Sbjct 586 GAGTCCACCCTCCATTTGGTTTTG 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201468828587860