Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq46 316 2e-81 seq240 163 3e-35 seq141 113 5e-20 >seq46 Length=25720 Score = 316 bits (350), Expect = 2e-81 Identities = 1214/1888 (64%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 2859 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 2918 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 2919 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 2978 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 2979 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 3038 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 53046 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 3039 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 3097 Query 53047 G---TTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA-TCTCATCAT 53102 | |||| |||| | |||| | | || || || | || | |||| |||| Sbjct 3098 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 3156 Query 53103 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 53162 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 3157 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 3216 Query 53163 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 53222 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 3217 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 3276 Query 53223 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 53282 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 3277 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 3336 Query 53283 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 53338 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 3337 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 3395 Query 53339 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 53398 || |||||| | ||| |||| || || ||| | |||| || Sbjct 3396 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 3455 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 3456 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 3515 Query 53459 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 3516 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 3574 Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 ||||| ||||| | ||||| || || | ||| | || ||||||||| |||||| Sbjct 3575 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 3634 Query 53578 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGA 53636 | | || ||||||||||||||||| | ||| |||| || ||| || || || Sbjct 3635 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 3693 Query 53637 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT-----CTATTAC 53691 ||| || || || || | || || |||||| |||| || |||| | Sbjct 3694 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 3753 Query 53692 AAACATGTTCAATGCA-ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750 || | | | | |||||||||| |||||||| || ||||| || | | | || Sbjct 3754 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 3813 Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 3814 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 3873 Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870 | || ||| ||||||||||| ||| ||||| ||||| || ||||| || || | Sbjct 3874 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 3933 Query 53871 CTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCT 53928 || | || ||| | | || || ||| | || || | | |||| | Sbjct 3934 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGTT--TTCCTACCGCGACCTTCTTT 3991 Query 53929 TTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 ||| ||||||| ||| ||| || ||| | ||| ||||| |||| | || ||||| Sbjct 3992 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 4049 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 4050 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 4109 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 4110 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 4169 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || | | || | || ||| || ||| | |||||| |||||||| || | | | Sbjct 4170 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 4229 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 4230 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 4289 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | ||||||||| | |||||| || |||||| || || ||| || ||| || Sbjct 4290 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 4349 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || |||||| || | | |||| || || || | || || ||| ||| Sbjct 4350 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 4409 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 |||| |||||| | ||||| || || ||||| ||| || || | |||||| Sbjct 4410 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 4469 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | Sbjct 4470 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 4529 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCC 54525 || | ||| || || | || || || || |||| ||||||| |||| | || || || Sbjct 4530 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 4588 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAG 54585 | ||| | |||||| | ||| || || ||||| || ||||| | | | ||| Sbjct 4589 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 4648 Query 54586 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 4649 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACGG-CTAA 4707 Query 54646 AAT-AATAACTGAGTTGAGTTTATCCTT 54672 ||| |||||||||||| | | |||| || Sbjct 4708 AATCAATAACTGAGTTTAATCTATCTTT 4735 >seq240 Length=77866 Score = 163 bits (180), Expect = 3e-35 Identities = 354/513 (69%), Gaps = 24/513 (5%) Strand=Plus/Minus Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 ||| || ||||| || | ||| ||||||| ||||| || |||||||||||||| | | | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CAC 77806 Query 24236 AAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCAT 24294 ||| | | |||||||| || || ||||| ||||| |||| |||| | ||||||| || Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAA 77746 Query 24295 A--ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | |||| | | || ||||||||| ||||| || ||||| |||| || || Sbjct 77745 ATGACCGAT--TATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGG 77688 Query 24353 CAT-TGTCTCTATAGCATTAAAGAGA---TAGtttttttCATTACTATCTTTAACATATG 24408 | ||| ||| || | ||| || | | | || |||| |||| | |||| Sbjct 77687 TAAATGTGA-TATTGCTTCAAAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATT 77632 Query 24409 TATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT 24468 |||||| ||||| ||| |||| ||||| | || || || ||||||||||| | Sbjct 77631 GATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCAT 77572 Query 24469 AGAAACAT-CTAGCCTCGGTAATCTGTA-CTTCTATACAAAATCGTTCTGCTAAATTTTC 24526 | | |||| ||||| || || || | || || || ||||| | | ||||| || || Sbjct 77571 A-ATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTCTC 77514 Query 24527 ATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 24586 | || ||||| ||||| ||||||||||| || || |||| ||| ||||||| |||| Sbjct 77513 CATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT-- 77456 Query 24587 GTCTGGT---GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 24643 |||||| ||| | | |||||| | || || | | || ||| | ||||| | Sbjct 77455 -TCTGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGC 77397 Query 24644 TGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 ||||||||||| || ||| | ||||| ||||| Sbjct 77396 AGTCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 113 bits (124), Expect = 5e-20 Identities = 296/436 (68%), Gaps = 23/436 (5%) Strand=Plus/Minus Query 23789 TTAAAAGTCAACATCTAAA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 23843 |||||| ||| |||||| | ||||| | | ||||| || |||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 370 Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||||||||| | || ||||| || ||||| ||||||||||||| |||||| ||| Sbjct 369 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 310 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| |||| ||||||| || ||||| || | || || | | | || | | Sbjct 309 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 250 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 || | ||| || ||||| || |||||| ||| | | | ||||||| || || || Sbjct 249 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 190 Query 24024 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 189 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 132 Query 24082 TAGATCTT--ACTGTTTCTTCACTCGGTGGA--TACAATAAATG-TTTAAACATCAAACA 24136 | |||| ||| | ||||| || || | | |||| |||| | | ||||| Sbjct 131 T--TTCTTGAACTCT---TTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACA 77 Query 24137 TGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 24195 | | || | |||| || | ||| || |||||| |||| ||| || ||||| || | || Sbjct 76 TCCAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 18 Query 24196 CGGGCATTAGGCCACG 24211 | ||||||| ||||| Sbjct 17 CAGGCATTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719544238960