Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq211 120 5e-22 seq213 114 2e-20 >seq211 Length=153182 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | ||| || ||||| | ||| ||||| || ||||||||||| || Sbjct 121345 CCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGAT 121404 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | |||||| ||||||||||| |||||||| ||||| || ||| Sbjct 121405 AAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGA 121464 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| || ||| ||| Sbjct 121465 ATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAACT 121524 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| ||||||||||| ||||| || || | || || ||||| Sbjct 121525 TCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 121571 >seq213 Length=131909 Score = 114 bits (126), Expect = 2e-20 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146063 CTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTA 146122 || || || |||||||||||||| || || ||||| || ||||| | |||||||| | Sbjct 113586 CTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCA 113645 Query 146123 TCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTA 146182 || || | ||| ||||||||||| || || | ||| ||||| ||||| ||||| || || Sbjct 113646 TCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTG 113705 Query 146183 TCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATT 146242 ||||| ||||| ||| ||| ||||||| ||| || Sbjct 113706 TCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATA 113765 Query 146243 GTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || ||||| ||||||| || ||||||||| Sbjct 113766 GTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 113801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743523825539840