Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq240 156 4e-33 >seq240 Length=77866 Score = 156 bits (172), Expect = 4e-33 Identities = 354/524 (68%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || |||||||| | || ||||||| ||| ||||| |||| |||||||||||| | Sbjct 77863 TCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAA 77804 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || |||||||| || |||||||||||||| ||| ||| | || || | | Sbjct 77803 AAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAAT 77744 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACA--GT 16454 | | ||| ||| ||| ||||| ||| | ||||| | ||| || |||||| || Sbjct 77743 GACCGATTATTA--TTC-ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGT 77687 Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtttttt--tCTTTGCTATCTAAAATATAAGT 16512 |||| | ||||| | ||| || |||| ||||| |||| | ||||| Sbjct 77686 AAATGTGAT--ATTGCTTCAAA--AAGCATTTGGCGATCTTTTACATCTGATATATATTG 77631 Query 16513 ATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA 16572 ||| |||| | ||| |||| ||||| | |||||| || || ||||| ||||| Sbjct 77630 ATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA 77571 Query 16573 AAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTT 16632 | | ||||||||| |||||| | || |||| || | |||||||| || | Sbjct 77570 ATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCAT 77511 Query 16633 AACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC--G 16690 || |||||||| |||||||||||||| || | | | ||||||||||| |||||| | Sbjct 77510 TACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGG 77451 Query 16691 TTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTC 16750 || | ||| ||| ||| || | || | |||||| | ||||||| ||||| Sbjct 77450 TTCCTTTAAACTTT--CCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTC 77393 Query 16751 CAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTC 16794 ||||| || || | | ||||| |||||| ||| || |||| Sbjct 77392 CAAAATGAGGCTTCTTCTTTTTTGTACATTGACCACATTACTTC 77349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510398552200