Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2 120 2e-22 >seq2 Length=183582 Score = 120 bits (132), Expect = 2e-22 Identities = 277/415 (67%), Gaps = 12/415 (3%) Strand=Plus/Plus Query 20043 ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCG-----TTGTTGAAGAGTTA 20097 |||||||||||||||||| ||| | | ||| || | | || |||| || ||| Sbjct 181189 ATTTCCCTTATTAACTACTAAA-----AATGTGGCAATGAGAATAATTTTTGAGGAATTA 181243 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| ||||| |||||| || | | |||| ||| ||| ||| Sbjct 181244 ATGTGGTTTATAAAAGGTGATACAAATGGTAATCACTTATTAGATAAAAAAGTATTTATT 181303 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| | ||||||| || | | ||| | | | ||| | | | || ||||| Sbjct 181304 TGGGCTGGTAATGGATCAAAAGAGTATTTGAATAAAATTGGTCTAGGTTATCGAGAAGAG 181363 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || |||||||| | ||||| |||||||||||||||||| || |||||| ||| Sbjct 181364 AATGACTTGGGTCCAATATATGGTTTTCAATGGAGACATTTTAATGCAGAATATAA-GAC 181422 Query 20278 A-TGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAAT 20336 | || | |||||| ||| |||||||||||||||||| |||| | ||| | | | | Sbjct 181423 AATGCATGATAATTATAATGGGCAAGGAGTAGATCAATTATCAAATTTAATTGAATCACT 181482 Query 20337 TAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCC 20396 ||| | || || | || |||||| ||| |||| || ||||| | | || Sbjct 181483 TAAGAAAAATCCTTATGATAGAAGACATATCTTATCTGCATGGAATCCATCTGCAATGAA 181542 Query 20397 TTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAAT 20451 | ||||| || || || |||||||| ||| |||||||| |||| ||||||| Sbjct 181543 ATATATGGCATTACCACCTTGTCATATATTATCTCAATTTTATGTTGATAATAAT 181597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399182652379765