Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq141 159 3e-34 seq240 145 7e-30 >seq141 Length=3141 Score = 159 bits (176), Expect = 3e-34 Identities = 264/372 (71%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||| |||||| |||| ||| ||||| |||||||||||||||| | ||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 13974 CCATAAAATCAAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATAG 14031 |||| ||||||||||||| || ||||| | ||||| ||| | |||| | || || Sbjct 308 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 251 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 ||| | ||| |||| || ||||||||||| | |||||| | ||||||| || || || Sbjct 250 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 191 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | |||||| | | || ||||||| ||| | ||||| || |||||| Sbjct 190 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 131 Query 14152 AATCGT-AATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCA 14209 || | || ||||| | | || ||| |||| |||||| | ||| |||||| || Sbjct 130 T-TCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCA 73 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 || || ||||| || ||||||||| || ||||| || |||||||||||||| ||| Sbjct 72 AAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGC 13 Query 14270 ATCAATCCTCGt 14281 || ||||| ||| Sbjct 12 ATTAATCCACGT 1 >seq240 Length=77866 Score = 145 bits (160), Expect = 7e-30 Identities = 357/533 (67%), Gaps = 29/533 (5%) Strand=Plus/Minus Query 14243 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 ||||| || |||||||||||||| ||||| ||||| ||||| || | ||||||||| ||| Sbjct 77866 AGTTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA 77807 Query 14303 GCGAATGAT-CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14361 | || | | || ||||| || || || ||||||||| ||| | |||| || |||| | Sbjct 77806 -CAAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGC 77748 Query 14362 AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA---- 14417 ||| || || || ||| ||||| ||| | |||||||| | || |||||| Sbjct 77747 AAATGACCGATTATTATTC---ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGC 77691 Query 14418 ---TAAA----ATCCATTGTTTC-AATAGCATTAAATAAATGTTCCTTCTCTTTAGTACT 14469 |||| || |||| ||| || |||||| || | ||| |||| | Sbjct 77690 TGGTAAATGTGAT--ATTGCTTCAAAAAGCATT-------TG-GCGATCT-TTTA-CATC 77643 Query 14470 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14529 ||| || ||| |||||| | | | ||| ||||| ||| || | |||||||| || Sbjct 77642 TGATATATATTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAAT 77583 Query 14530 CTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGC 14589 ||||| |||||| | |||||||||| ||| | ||| |||| || | || Sbjct 77582 TTGAAATCCATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGC 77523 Query 14590 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14649 || || || | || || ||||||||||||||||||||||| || | | ||||||||| Sbjct 77522 TAAGTTCTCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAA 77463 Query 14650 GTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14709 | || ||| | | | ||| |||||| | |||| | | ||||| || Sbjct 77462 ATGTTTTTCTGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTC 77403 Query 14710 ATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTT 14762 || | |||||||| || | ||||||| |||||| ||| ||| ||| Sbjct 77402 TTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGTACATTGACCACATTACTT 77350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482343929878360