Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq46 118 9e-22 seq240 82.4 7e-11 >seq46 Length=25720 Score = 118 bits (130), Expect = 9e-22 Identities = 361/543 (66%), Gaps = 15/543 (3%) Strand=Plus/Plus Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGAC--GTGTACTCTACAATTTCGGTACATAG 23088 |||| || || || || ||||||| ||| || || ||||| | |||||| |||||||| Sbjct 3779 CAAG-TTACAAACTGCGACCTCGT--TTGAACTAGTATACTCCATAATTTCTGTACATAG 3835 Query 23089 ATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTT 23148 ||||||| | |||||||| |||| ||| || |||||||| ||||| | |||||| Sbjct 3836 ATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTT 3895 Query 23149 GTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGT 23208 ||| || | || || || ||||| | || |||| | | || ||||| | | Sbjct 3896 ATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACAAACT 3955 Query 23209 CTGAGCGTGAACACGTCGCACGTAC--CTGCCTTCTTCCTCGTACTTTTGGTACAACGCG 23266 || || | || || | ||| | ||||||| || || | || || || | Sbjct 3956 TTGTGCTTTAA-TTGT-TTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCT 4013 Query 23267 TCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGAC 23324 | ||||| | |||| | ||| || || || || ||| |||| |||||||| | Sbjct 4014 TTAAATTGGTCACCCCAGACA-TCTTGCATCCCAGGGCATT-CATCAGGACACATTAATG 4071 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCT-CATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| ||| || || || || | ||| ||| || ||||| ||||||||||| || Sbjct 4072 TCCAGTTTGCATCCTTCTCTACTC-TCTCCATGAACAGATCAGGTATCCATAGTGCTGGA 4130 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || | || ||| | || ||||||||| || |||||| | | || | ||| ||| Sbjct 4131 AATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCC 4190 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || ||||||||||| || || | || || |||| || ||| || || || Sbjct 4191 AAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCA 4250 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 || || || || ||||| || || | || ||||| | ||||| || | | ||| || Sbjct 4251 CCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTA 4310 Query 23564 GAC 23566 ||| Sbjct 4311 GAC 4313 >seq240 Length=77866 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 57579 ATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT 57638 ||||||||||| | |||||| || |||||||| | ||||| |||| | | |||| Sbjct 77364 ATGTACAAAAAAGAAGAAGCCTCATTTTGGACTGCAGAAGAGATAGATTTAGGTCAGGAC 77423 Query 57639 CTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCG 57698 |||| |||||||| | || ||| | || | | ||||||||||| | || || || Sbjct 77424 ATGAGAGATTGGGAAAGTTTAAAGGAACCAGAAAAACATTTTATTAAATATGTCTTAGCA 77483 Query 57699 TTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAA 57758 ||||| || || ||||| ||||| | ||||| || | | || |||| | | || Sbjct 77484 TTTTTTGCAGCTAGTGATGGAATTGTAATGGAGAACTTAGCTGTAAATTTTTTAAAGGAG 77543 Query 57759 GTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGA 57808 | ||| | || || ||| | ||| ||||||||| | || || || Sbjct 77544 ATTCAAATAGAAGAAGCTAGAATGTATTATGGATTTCAAATTGCTATGGA 77593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764856533840