Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq46 311 1e-79 seq240 154 2e-32 seq141 129 7e-25 >seq46 Length=25720 Score = 311 bits (344), Expect = 1e-79 Identities = 1210/1879 (64%), Gaps = 40/1879 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 2859 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 2918 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 2919 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 2978 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 2979 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 3038 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62284 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 3039 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 3097 Query 62285 G---TTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA-TCTCATCAT 62340 | |||| |||| |||| | | || || || | || | |||| |||| Sbjct 3098 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 3156 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 ||||| | || |||| | | | | ||| || || || || ||| || | Sbjct 3157 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 3216 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 3217 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 3276 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 3277 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 3336 Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC----GACGGTACA 62576 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 3337 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 3395 Query 62577 ACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCA 62636 ||| | ||||||| | ||| |||| || || ||| | |||| ||| Sbjct 3396 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 3455 Query 62637 TATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62696 || || || | |||||| ||||| | |||||| || || | ||| | || || || || Sbjct 3456 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 3515 Query 62697 TCAAAGATCTTCTTATTTAG-ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 ||||| |||| |||||| || || || || ||| ||||||| | || | Sbjct 3516 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 3574 Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 ||||| || || | ||||| || || | ||| | || ||||||||| |||||| Sbjct 3575 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 3634 Query 62816 GATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 3635 -CCTCCTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 3693 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTAT-TA 62928 ||| || || || || | || || |||||| ||| | || |||| | Sbjct 3694 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 3753 Query 62929 CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCAT 62988 |||| | | | |||||||| ||||| || || ||||| || | | | || Sbjct 3754 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 3813 Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 3814 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 3873 Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 3874 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 3933 Query 63109 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--CTTTCTCT 63166 || | || ||| | | | || || ||| | || || | | | |||| | Sbjct 3934 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 3991 Query 63167 TTCGTATAGAGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 ||| |||| || ||| ||| || || | ||| ||||| |||| | || | ||| Sbjct 3992 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 4049 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 4050 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 4109 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 ||||| ||||| || ||| ||||| ||| | ||| ||||| || || ||| Sbjct 4110 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 4169 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 || | | || | || ||| || ||| | |||||| |||||||| || | || | Sbjct 4170 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 4229 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 4230 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 4289 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTAC--CGGAGATAT-AGCCTCCACTG 63521 | ||||||||| | ||| || || ||||||| |||| |||| ||| | ||| || Sbjct 4290 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCA--- 4346 Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 || || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 4347 GCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACAT 4406 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 |||| || ||| | ||||| || || ||||| ||| || || | |||||| Sbjct 4407 TTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAA 4466 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| Sbjct 4467 GAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAA 4526 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAAT 63760 | || | ||| || || | || || ||||| |||| |||||| | |||| | || || Sbjct 4527 TACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGAT 4585 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || | ||| | |||||| | ||| || || ||||| ||||| || | | | Sbjct 4586 ACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCG 4645 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | Sbjct 4646 CAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GC 4704 Query 63881 GTAAAT-AATAACCGAATT 63898 |||| |||||| || || Sbjct 4705 TAAAATCAATAACTGAGTT 4723 >seq240 Length=77866 Score = 154 bits (170), Expect = 2e-32 Identities = 350/512 (68%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 33623 TTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33682 ||| |||||||| || | ||| ||||||| ||||| || |||||||||||||| | | | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-C 77806 Query 33683 GAATGAT-CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT 33741 || | | || ||||| ||||| ||||| |||||| |||| |||| | ||| ||| || Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAA 77746 Query 33742 A--ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 | |||| | | || ||||||||| ||||| || ||||| |||| || || Sbjct 77745 ATGACCGAT--TATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGG 77688 Query 33800 CATCGTTTCTATGGCATTAAAGAGA---TAGtttttttCATTACTATCTTTAACATAAGT 33856 | | ||| || | ||| || | | | || |||| |||| | ||| Sbjct 77687 TAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTG 77631 Query 33857 ATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTA 33916 ||| || ||||| ||| |||| ||||| | || || || || |||||||| || Sbjct 77630 ATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA 77571 Query 33917 GAAACAT-CTAGCCTCGGTAATCTGCA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCA 33974 | |||| ||||| || || || | || || || ||||| | | ||||| || || Sbjct 77570 -ATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTCTCC 77513 Query 33975 TTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 34034 | || ||||||||||| ||||||||||| || || |||| ||| ||||||| |||| Sbjct 77512 ATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT--- 77456 Query 34035 TCTGGT---GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 34091 |||||| ||| | | |||||| | || || | | || ||| | ||||| | Sbjct 77455 TCTGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCA 77396 Query 34092 GTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 ||||||||||| || ||| | ||||| ||||| Sbjct 77395 GTCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 129 bits (142), Expect = 7e-25 Identities = 297/434 (68%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 33290 |||||| ||| |||||| | ||||| | | ||||| || |||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 370 Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||||||||| | || ||||| || ||||| |||||||| |||| ||||| ||| Sbjct 369 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 310 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| ||||| || |||||||| | ||| || | | | || | | Sbjct 309 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 250 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || | ||| || || ||||| |||||| ||| | | | ||||||| || ||||| Sbjct 249 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 190 Query 33471 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || || | || |||| ||| |||| |||||| || || | || ||||| Sbjct 189 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 132 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATG--TAATAAATG-TTTAAACATCAAACATG 33585 | | ||| | ||||| || || | || | |||| |||| | | |||||| Sbjct 131 TTTCTTGAAC---TCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATC 75 Query 33586 CGAAAT-CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 | || | |||| || | ||| || |||||| |||| ||| |||||||| || | ||| Sbjct 74 CAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 16 Query 33645 GGCATTAGGCCACG 33658 ||||||| ||||| Sbjct 15 GGCATTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815419256560