Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq46 280 1e-70 seq240 174 1e-38 seq141 105 6e-18 >seq46 Length=25720 Score = 280 bits (310), Expect = 1e-70 Identities = 1186/1850 (64%), Gaps = 60/1850 (3%) Strand=Plus/Plus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 ||||||| ||||||||||| || || |||||| | || || |||||||||| Sbjct 2859 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 2918 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 ||| ||||||| || || |||||| | || ||||| || | | ||| | ||| Sbjct 2919 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 2978 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 || || | | || ||| |||| || | | ||||| || || ||||| || | | Sbjct 2979 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 3038 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT---GGT 37032 | |||||| || ||||| || ||||| || | | | | ||||| ||| Sbjct 3039 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACA---GGTCGCGAATATCTCGCGGT 3095 Query 37033 AAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTAT--GTCAT 37087 | | || | || ||||| | ||||| | || || || || ||| | | ||| Sbjct 3096 ATAGACTCAATATTTTGAACACTTCCATTGT-TAGCA--ATGATACTCTGTTTCAGTCTC 3152 Query 37088 TATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | ||| |||| | | | || | || || |||| | || ||||| ||||| || Sbjct 3153 TCATCC-CATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAA 3211 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| ||||| | || ||||||||| ||| ||||||||| | ||||| Sbjct 3212 CTCCCCAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATT 3271 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 ||| | || || |||||||||||||| ||||||||||| |||| | | ||||| Sbjct 3272 ATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCT 3331 Query 37266 CAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG--GG 37323 | |||| || ||| ||| || ||| || ||| | ||| | ||| | || Sbjct 3332 AAGGCCATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGG 3391 Query 37324 TT---CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380 || | || ||| | |||| ||||||| | |||| |||| ||||| ||| | | | || Sbjct 3392 TTGCACATT--CCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAAT 3449 Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 || ||||| || || || | | ||||| || ||||| | || || || ||||| ||| Sbjct 3450 GTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTAT 3509 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 ||||| || || || | | ||||| | | | || |||| || ||| ||| | | Sbjct 3510 ATTGTCTCAAATATCTCAACATTTAGTTTCCTGGCATCTTTAGATTCATATGGATATCTC 3569 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 |||| ||||| ||| || | ||| || || || | ||| | || |||||| || | Sbjct 3570 AATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGA 3629 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 ||||| || | ||| | |||||||| ||| || | || ||||||||| Sbjct 3630 TTAGACCTCCTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTC 3689 Query 37621 TTAACTAGTAT-TTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATT--- 37676 | | || ||| || || | | | ||| | || ||| ||||||| Sbjct 3690 CTTGTTGCTACCTTTACTACTTCATAT-AGCTTTTTAAAATCGAATTTCTTATTATCCCT 3748 Query 37677 ---AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 |||||| | | | |||||| | | ||||| || || || || | | | Sbjct 3749 ATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACT 3808 Query 37734 ACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTG 37793 | || | | ||||| |||||||| ||||| || ||| | || || |||| ||| ||| Sbjct 3809 AGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTG 3868 Query 37794 ATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTG 37853 |||| ||| |||| | ||| ||||| ||| | || || ||| || ||||| Sbjct 3869 ATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTG 3928 Query 37854 AGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttttt----- 37908 | || | | | ||| |||||| |||||||| | | ||| | Sbjct 3929 TGACTGTAGCAATGCAAACCACAAACTTTGTGCTTTAA---TTGTTTTCCTACCGCGACC 3985 Query 37909 ttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCATA 37966 |||||| ||| || | | |||||||| ||||| | | ||||| ||||| |||| Sbjct 3986 TTCTTT--TTCATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATC 4043 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 || || ||||| |||||||||| | ||| | | |||| || ||||| | |||| Sbjct 4044 --CCAGGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCA 4101 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 | || | |||||||| ||||| ||| | ||||| ||| | ||| || || || | Sbjct 4102 TGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTAC 4161 Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 | ||||| |||| || ||| || || | ||| || ||||| ||||| | ||| | Sbjct 4162 CATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGA 4221 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | ||| || ||||| | || || || | || ||| | |||| | ||||| Sbjct 4222 CAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTAT 4281 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC--GGATATATAAGT 38264 | | | | ||| || | || ||||||||| | || || |||| |||| ||| | Sbjct 4282 ACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGAT- 4340 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTG---ATAT 38321 || ||||||||||||| | | || |||| |||||| ||| || ||| |||| Sbjct 4341 -CCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCA-GTCTTGCTTATAT 4398 Query 38322 TAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAG 38381 | || |||| |||| |||||||| || || || || |||||| ||| || Sbjct 4399 T--TGCACATTTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAG 4456 Query 38382 TATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441 ||||||||| ||||| || || |||| || || || |||||||| |||| || Sbjct 4457 AATAAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGC 4516 Query 38442 ATGTATGAACCATTTTTCCGACAAATAA--TTATATGTTTCTATTACATCATCTATATCA 38499 ||| | || || ||| || | | | | ||| ||||| ||| | ||||||||| | Sbjct 4517 ATGAGTAAA--ATACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTA 4574 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 || ||| ||||| || || ||||||| | |||||||| ||||| | || ||| Sbjct 4575 CCATAGTGGATACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTA 4634 Query 38560 TTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | || |||| ||| ||| |||||| || || | ||||||| Sbjct 4635 TCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATA 4684 >seq240 Length=77866 Score = 174 bits (192), Expect = 1e-38 Identities = 356/519 (69%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 11669 AGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCA 11728 ||||||||||||||||||||||| ||||| ||||| ||||| || | ||||||||||||| Sbjct 77866 AGTTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA 77807 Query 11729 GCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA 11788 ||| |||||||| || || || || || || ||| | | |||||||||| || Sbjct 77806 CAAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCA 77747 Query 11789 TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTC 11847 || | || || ||||| ||| | ||||| || || || |||| || || Sbjct 77746 AATGACCGATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGT 77687 Query 11848 CATTGTTTCTATAGCGTTAAATAAATGCATTT---TTTCTATATTATCTCTTACATATGT 11904 | || | ||| || | | ||| |||||| ||| | |||| || |||| Sbjct 77686 AAATG-TGATATTGCTTCA---AAAAGCATTTGGCGATCTTTTACATCTGATATATATTG 77631 Query 11905 ATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATA 11964 ||| ||||| | ||| |||| ||||| | |||||||| |||||||||||||| Sbjct 77630 ATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA 77571 Query 11965 GAAACA-TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCAT 12023 | ||| || || ||| || | ||| |||| || | ||||| ||||| Sbjct 77570 -ATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCA 77512 Query 12024 TTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGT 12083 ||||||| |||||||||| |||||||||||||| | || ||| ||||| | |||||| Sbjct 77511 TTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTG 77452 Query 12084 CTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGA--TAAATCTACTTCTTCAACGGT 12141 || |||| | |||||||| ||| || | ||| |||||||| ||||| | || Sbjct 77451 GTTCCTTTAAACTTTCCCAATC-TCT-CATGTCCTGACCTAAATCTATCTCTTCTGCAGT 77394 Query 12142 CCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGAT 12180 |||||| || || || ||| |||||| ||| || Sbjct 77393 CCAAAATGAGGCTTCTTCTTTTTTGTACATTGACCACAT 77355 >seq141 Length=3141 Score = 105 bits (116), Expect = 6e-18 Identities = 249/373 (67%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||| |||||| |||||| || ||||| ||||| ||||||| || ||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | ||| ||||| |||||| | | ||| | | ||| | | || Sbjct 308 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 249 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 | | ||| || || ||||| ||||| || | |||||| | | ||||||| || || |||| Sbjct 248 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 189 Query 11520 CCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCG 11579 | || || | | | | ||||| ||| | | ||| || || || || Sbjct 188 CTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT-- 131 Query 11580 ACGTTAT--AACTTCCTTAGATGGTGGATG--TAATAAATGTTTAA-ACATTAAACACGC 11634 || | |||| | | |||| || | || | ||||||| | | | |||||| | Sbjct 130 ---TTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCC 74 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| || ||| | |||||| |||||| ||||||||||||||||||||||||||| || Sbjct 73 AAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGG 14 Query 11695 CATCAATCCTCGt 11707 ||| ||||| ||| Sbjct 13 CATTAATCCACGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523177732880