Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq46 329 4e-85 seq240 165 1e-35 seq141 123 3e-23 >seq46 Length=25720 Score = 329 bits (364), Expect = 4e-85 Identities = 1217/1888 (64%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 2859 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 2918 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 2919 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 2978 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 2979 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 3038 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 65077 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 3039 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 3097 Query 65078 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCATCAT 65133 | |||| |||| |||| | || || || || | || | |||| |||| Sbjct 3098 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 3156 Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 3157 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 3216 Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 3217 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 3276 Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 3277 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 3336 Query 65314 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 65369 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 3337 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 3395 Query 65370 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 65429 || |||||| | ||| |||| || || ||| | |||| || Sbjct 3396 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 3455 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 3456 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 3515 Query 65490 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 65548 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 3516 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 3574 Query 65549 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608 ||||| ||||| | ||||| || || | ||| | || ||||||||| |||||| Sbjct 3575 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 3634 Query 65609 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 65667 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 3635 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 3693 Query 65668 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT-----CTATTAC 65722 ||| || || || || | || || |||||| ||| || || |||| | Sbjct 3694 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 3753 Query 65723 AAACATGTTCAATGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 65781 || | | | | | |||||||| |||||||| || ||||| || | | | || Sbjct 3754 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 3813 Query 65782 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 65841 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 3814 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 3873 Query 65842 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 65901 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 3874 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 3933 Query 65902 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--TTTTCTCT 65959 || | || ||| | | | || || ||| | || || | | |||| | Sbjct 3934 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 3991 Query 65960 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 66017 ||| ||||||| ||| ||| || || | ||| ||||| |||| | || ||||| Sbjct 3992 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 4049 Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 4050 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 4109 Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 4110 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 4169 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 || | | || | || ||| || ||| |||||| |||||||| || | || | Sbjct 4170 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 4229 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 4230 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 4289 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 | ||||||||| | |||||| || ||||||| || || ||| || ||| || Sbjct 4290 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 4349 Query 66318 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377 || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 4350 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 4409 Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 |||| |||||| | ||||| || || ||||| ||| || || | |||||| Sbjct 4410 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 4469 Query 66438 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 66497 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | Sbjct 4470 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 4529 Query 66498 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCC 66556 || | ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 4530 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 4588 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616 | ||| | |||||| | ||| || || ||||| || ||||| | | | || Sbjct 4589 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 4648 Query 66617 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 4649 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAA 4707 Query 66677 AAT-AATAACCGAGTTGAGTTTATCCTT 66703 ||| |||||| ||||| | | |||| || Sbjct 4708 AATCAATAACTGAGTTTAATCTATCTTT 4735 >seq240 Length=77866 Score = 165 bits (182), Expect = 1e-35 Identities = 354/511 (69%), Gaps = 20/511 (4%) Strand=Plus/Minus Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 36258 ||| || ||||| || | ||| ||||||| ||||| || |||||||||||||| | | | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CAC 77806 Query 36259 AAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 36317 ||| | | |||||||| || || ||||| ||||| |||| |||| | ||| ||| || Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAA 77746 Query 36318 A--ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | |||| | | | || ||||||||| ||||| || ||||| |||| || || Sbjct 77745 ATGACCG--ATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGG 77688 Query 36376 CAT-TGTCTCTATAGCATTAAAGAGA---TAGtttttttCATTACTATCTTTAACATATG 36431 | ||| ||| || | ||| || | | | || |||| |||| | |||| Sbjct 77687 TAAATGTGA-TATTGCTTCAAAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATT 77632 Query 36432 TATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT 36491 |||||| ||||| ||| |||| ||||| | || || || ||||||||||| | Sbjct 77631 GATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCAT 77572 Query 36492 AGAAACAT-CTAGCCTCGGTAATCTGTA-CTTCTGTACAAAATCGTTCTGCTAAATTTTC 36549 | | |||| ||||| || || || | || || || ||||| | | ||||| || || Sbjct 77571 A-ATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTCTC 77514 Query 36550 ATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 36609 | || ||||| ||||| ||||||||||| || || |||| ||| ||||||| |||||| Sbjct 77513 CATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC 77454 Query 36610 -GTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 36668 | || | ||| | | |||||| | || || | | || ||| | ||||| | | Sbjct 77453 TGGTTCCT-TTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAG 77395 Query 36669 TCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 |||||||||| || ||| | ||||| ||||| Sbjct 77394 TCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 123 bits (136), Expect = 3e-23 Identities = 296/434 (68%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 35812 TTAAAAATCAACATCTAGA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 35866 |||||| ||| |||||||| ||||| | | ||||| || |||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 370 Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||||||||| | || ||||| || ||||| ||||||||||||| |||||| ||| Sbjct 369 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 310 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| |||||||| | ||||| || | ||| || | | | || | | Sbjct 309 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 250 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 || | ||| || |||||||| |||||| ||| | | | ||||||| || || || Sbjct 249 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 190 Query 36047 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 189 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 132 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGA--TACAATAAATG-TTTAAACATCAAACATG 36161 | | ||| | ||||| || || | | |||| |||| | | |||||| Sbjct 131 TTTCTTGAACTCT---TTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATC 75 Query 36162 CGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 | || | |||| || | ||| || |||||| |||| ||| || ||||| || | ||| Sbjct 74 CAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 16 Query 36221 GGCATTAGGCCACG 36234 ||||||| ||||| Sbjct 15 GGCATTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170521076680