Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq46 419 3e-112 seq240 156 6e-33 seq141 120 4e-22 >seq46 Length=25720 Score = 419 bits (464), Expect = 3e-112 Identities = 1236/1884 (66%), Gaps = 26/1884 (1%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 2859 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 2918 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || ||||||| ||||| |||||| | ||| || | ||| | | || ||| ||| Sbjct 2919 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 2978 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 2979 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 3038 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 78956 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 3039 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 3097 Query 78957 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCTTCAT 79012 | |||| |||| |||| | || || || || | || | ||||| ||| Sbjct 3098 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTCT-CAT 3156 Query 79013 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 3157 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 3216 Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132 |||||||||| | || | || ||||| |||| ||||||| | ||||||||| | Sbjct 3217 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 3276 Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 79192 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 3277 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 3336 Query 79193 CGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACA--- 79248 | || | | || ||||| || || || | ||||| | |||||| | || | | Sbjct 3337 CATACTTAGCT-ATTTTCTCCTTCAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGC 3395 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 |||||||| |||||| ||||||| | ||| ||||||| ||| ||| |||||||| Sbjct 3396 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 3455 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 || || || | ||| || |||| |||||||| || || | || | || || || || Sbjct 3456 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 3515 Query 79369 TCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG 79427 || || |||| ||| || | | || || ||| ||| ||||||| | || | Sbjct 3516 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 3574 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 ||||| ||||| | ||||| || || | ||| | || ||||||||| |||||| Sbjct 3575 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 3634 Query 79488 AATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGA 79546 | | || ||||||||||||||||| | ||| |||| || ||| |||||||| Sbjct 3635 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 3693 Query 79547 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCAT-----CTATTAC 79601 | ||| || || || || | ||| || |||||| ||| || |||| | Sbjct 3694 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 3753 Query 79602 AAACATGTTCAA-CGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 79660 || | | | | | | |||||||| |||||||| || ||||| || | | | || Sbjct 3754 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 3813 Query 79661 ATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTAC 79720 | | || ||||| || || || || ||| | || || || || | |||||||||||| | Sbjct 3814 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 3873 Query 79721 TCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATT 79780 | || ||| ||||||||||| ||| || |||||||| || ||||| || || | Sbjct 3874 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 3933 Query 79781 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTT 79840 || | || ||| | | | || || ||| | | | | |||| ||| Sbjct 3934 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGTTTTCCTACCGCGACCTTCTTTTT 3993 Query 79841 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATT 79900 | || ||| ||||||| || || | ||| ||||| ||||| | | ||||| |||| Sbjct 3994 CATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGGCATT 4053 Query 79901 CGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAG 79960 | ||||||||||| || | ||| | | |||| | || ||||| | ||| || ||||||| Sbjct 4054 CATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAG 4113 Query 79961 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 80020 | ||||| || ||| ||||| ||| | | ||| |||||| || || ||||| Sbjct 4114 GTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCC 4173 Query 80021 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 80080 | | || | || ||| || ||| | |||||| |||||||| || | || | | | Sbjct 4174 TTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCAC 4233 Query 80081 CCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 80140 || | ||| ||| || || || | || | || || | |||||| || | || || Sbjct 4234 CCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCA 4293 Query 80141 TTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 80200 ||||||| | |||||| || ||||||| || || ||| || ||| || || | Sbjct 4294 TTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTA 4353 Query 80201 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 ||||| || | | |||| ||| || || | || || ||| ||| |||| Sbjct 4354 TATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTCTTTA 4413 Query 80261 ACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA 80320 |||||| | ||||| || || ||||| ||| || || | |||||| |||| Sbjct 4414 GTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACA 4473 Query 80321 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 80380 | || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | || | Sbjct 4474 TCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCT 4533 Query 80381 CAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATTGATGAATTCCTACC 80439 ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 4534 GAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACCACAG 4592 Query 80440 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 80499 | ||| | |||||| | ||| || || ||||| || ||||| | || | || || Sbjct 4593 GAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAA 4652 Query 80500 TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT- 80558 |||||| |||| | ||| |||||| ||||||||| ||| ||| || || | |||| Sbjct 4653 TAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAAAATC 4711 Query 80559 AATAACCGAGTTGAGTTTATCCTT 80582 |||||| ||||| | | |||| || Sbjct 4712 AATAACTGAGTTTAATCTATCTTT 4735 >seq240 Length=77866 Score = 156 bits (172), Expect = 6e-33 Identities = 351/512 (69%), Gaps = 18/512 (4%) Strand=Plus/Minus Query 49999 AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 50058 ||||| || ||||| || | ||| ||||||| ||||| || |||||||||||||| | | Sbjct 77866 AGTTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-C 77808 Query 50059 GCAAATGAC-CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC 50117 |||| | |||||||| ||||| ||||| ||||| |||| ||| | ||| ||| | Sbjct 77807 ACAAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGC 77748 Query 50118 ATAACTGGCGCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 50176 | || || | | || ||||||||| ||||| || ||||| |||| || | Sbjct 77747 A-AATGACCGATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTG 77689 Query 50177 GCATCGTTTCTATGGCATTAAAGAGA---TAGtttttttCATTACTATCTTTAACATAAG 50233 | | | ||| || | ||| || | | | || |||| |||| | ||| Sbjct 77688 GTAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATT 77632 Query 50234 TATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGT 50293 ||| || ||||| ||| |||| ||||| | || || || || |||||||| | Sbjct 77631 GATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCAT 77572 Query 50294 AGAAACAT-CTAGCCTCGGTAATCTGCA-CTTCTGTACAAAATCGTTCAGCTAAATTTTC 50351 | | |||| ||||| || || || | || || || ||||| | ||||||| || || Sbjct 77571 A-ATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTCTC 77514 Query 50352 ATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC 50411 | || ||||| ||||| ||||||||||| || || |||| ||| |||||||||||||| Sbjct 77513 CATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC 77454 Query 50412 GTTGGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469 ||| | ||| | | |||||| | || || | | || ||||| ||||| | Sbjct 77453 --TGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCA 77396 Query 50470 GTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||||||||||| || ||| | ||||| ||||| Sbjct 77395 GTCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 120 bits (132), Expect = 4e-22 Identities = 294/433 (68%), Gaps = 17/433 (4%) Strand=Plus/Minus Query 49614 TTAAAAGTCAACATCTAGA--GAAAAATGATTATCTTCT--TGAGACATAACTCCCATTT 49669 |||||| ||| |||||||| ||||| | | | |||| |||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 369 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 ||||||||||| | || ||||| || ||||| |||||||| |||| ||||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| ||||||| ||||| || ||||| || | ||| || | | | || | | | Sbjct 308 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 249 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 | | ||| || |||||||| |||||| ||| | | | ||||||| || || || | Sbjct 248 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 189 Query 49850 TAACTGG--AAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 || || | || | || ||| |||| |||||| || || |||| |||||| Sbjct 188 CTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 131 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATG--CAATAAATG-TTTAAACATCAAACATGC 49964 | ||| | ||||| || || | | | |||| |||| | | |||||| | Sbjct 130 TTCTTGAAC---TCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCC 74 Query 49965 GAAAT-CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 || | |||| || | ||| || |||||| |||||||| || ||||| || | ||| | Sbjct 73 AAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAG 15 Query 50024 GCATTAGGCCACG 50036 |||||| ||||| Sbjct 14 GCATTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266312994280