Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq141 165 8e-36 seq240 141 9e-29 >seq141 Length=3141 Score = 165 bits (182), Expect = 8e-36 Identities = 263/371 (71%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||| |||||| |||| ||| ||||| |||||||||||||||| | ||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 13642 CCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATAG 13699 |||| ||||||||||||| | ||||| | ||||| ||| | |||| | || || Sbjct 308 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 251 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| | |||||||| ||| ||||||||||| | |||||| | ||||||| || || || Sbjct 250 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 191 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | |||||| | | || ||||||| ||| | ||||| ||| |||||| Sbjct 190 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 131 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCAA 13878 | || | ||| | | || ||| |||| |||||| | ||| |||||| ||| Sbjct 130 TTCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCAA 72 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | || ||||| || ||||||||| || ||||| || |||||||||||||| |||| Sbjct 71 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 12 Query 13939 TCAATCCTCGt 13949 | ||||| ||| Sbjct 11 TTAATCCACGT 1 >seq240 Length=77866 Score = 141 bits (156), Expect = 9e-29 Identities = 352/531 (66%), Gaps = 25/531 (5%) Strand=Plus/Minus Query 13911 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 ||||| || |||||||||||||| ||||| ||||| ||||| || | ||||||||| ||| Sbjct 77866 AGTTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA 77807 Query 13971 GCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA 14030 ||| || ||||| || || || ||||||||| ||| | |||| || |||| || Sbjct 77806 CAAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCA 77747 Query 14031 AACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA----- 14085 || || || || ||| ||||| ||| | |||||||| | || |||||| Sbjct 77746 AATGACCGATTATTATTC---ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCT 77690 Query 14086 --TAAA----ATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTG 14139 |||| || |||| ||||| ||| | | | ||| |||| | || Sbjct 77689 GGTAAATGTGAT--ATTGCTTCAA-------AAAGCATTTGGCGATCT-TTTA-CATCTG 77641 Query 14140 AAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14199 | || ||| |||||| | | | ||| ||||| ||| || | |||||||| || | Sbjct 77640 ATATATATTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTT 77581 Query 14200 GAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCA 14259 |||| |||||| | ||||||||| ||| | ||| |||| || | || | Sbjct 77580 GAAATCCATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTA 77521 Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14319 | || || | || || ||||||||||||||||||||||| || | | ||||||||| | Sbjct 77520 AGTTCTCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAAT 77461 Query 14320 ATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCAT 14379 || ||| | || | ||| |||||| | |||| | | ||||| || | Sbjct 77460 GTTTTTCTGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTT 77401 Query 14380 CAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTT 14430 | | |||||||| || | ||||||| |||||| ||| ||| ||| Sbjct 77400 CTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGTACATTGACCACATTACTT 77350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726338941800