Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq141 168 6e-37 seq240 149 6e-31 >seq141 Length=3141 Score = 168 bits (186), Expect = 6e-37 Identities = 266/372 (72%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||| |||||| |||| ||| |||||||||||||||||||||| | ||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 13430 CCATAAAATCGAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATAA 13487 |||| |||| |||||||| || ||||| | ||||| ||| | |||| | || | Sbjct 308 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 251 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 ||| | |||||||| ||| ||||||||||| | |||||| | ||||||| || || || Sbjct 250 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 191 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | |||||| | | || | ||||||| ||| | ||||| || |||||| Sbjct 190 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 131 Query 13608 AATCTT-AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCA 13665 |||| || | ||| | | || ||| |||| |||||| | ||| |||||| || Sbjct 130 T-TCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCA 73 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || || ||||| || ||||||||| || ||||| || |||||||||||||| ||| Sbjct 72 AAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGC 13 Query 13726 ATCAATCCTCGt 13737 || ||||| ||| Sbjct 12 ATTAATCCACGT 1 >seq240 Length=77866 Score = 149 bits (164), Expect = 6e-31 Identities = 353/524 (67%), Gaps = 11/524 (2%) Strand=Plus/Minus Query 13699 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||| || |||||||||||||| ||||| ||||| ||||| || | ||||||||| ||| Sbjct 77866 AGTTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA 77807 Query 13759 GCGAATGAT-CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCC 13817 | || | | || ||||| || || || ||||||||| ||| | |||| || |||| | Sbjct 77806 -CAAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGC 77748 Query 13818 AAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA-TAA 13876 ||| || || || || ||||| ||| | |||||||| | || |||||| | Sbjct 77747 AAATGACCGATTATTATT---CATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGC 77691 Query 13877 AATCCATTGTTTCGATTGCATTGAATAA--ATGTTCCTTCTCTTTAGTACTTGAAATGTA 13934 | || | ||||| || || || || || ||||| | ||| || || Sbjct 77690 TGGTAAATG-TGATATTGC-TTCAAAAAGCAT-TTGGCGATCTTTTACATCTGATATATA 77634 Query 13935 TGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACC 13994 | |||||| | | | ||| ||||| ||| || | || ||||| || ||||| || Sbjct 77633 TTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCC 77574 Query 13995 ATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTC 14054 |||| | |||||||||| ||| | |||| |||| || | || ||||| || Sbjct 77573 ATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTC 77514 Query 14055 ATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14114 | ||||| ||||||||||||||||||||||| || | | ||||||||| | || || Sbjct 77513 CATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC 77454 Query 14115 TTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGT 14174 | | || | ||| |||||| | |||| | | ||||| || || | || Sbjct 77453 TGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGT 77394 Query 14175 CCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTT 14218 |||||| || | ||||||| |||||| ||| ||| ||| Sbjct 77393 CCAAAATGAGGCTTCTTCTTTTTTGTACATTGACCACATTACTT 77350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587142886280