Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq46 342 7e-89 seq240 174 2e-38 seq141 109 7e-19 >seq46 Length=25720 Score = 342 bits (378), Expect = 7e-89 Identities = 1189/1838 (65%), Gaps = 30/1838 (2%) Strand=Plus/Plus Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || ||||||| ||| ||||||| || || |||||| | ||| || | |||| | Sbjct 2907 CCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTG 2966 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 | || || || | |||||| | |||||| |||| ||| | | ||| || ||||| Sbjct 2967 GCATTTGCAATATAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCC 3026 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAAT 71027 ||||| | || | | |||||| ||||||||| | ||||| || | |||| ||| Sbjct 3027 GCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AAT 3085 Query 71028 ATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 |||| || | | |||| |||| |||| | ||||| || || | ||| Sbjct 3086 ATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTT 3145 Query 71085 GA-TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | ||||| ||| ||||| | || |||| | | | | ||||||||| || | Sbjct 3146 CAGTCTCT-CATCCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAA 3204 Query 71144 CTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 | || || ||||||||||| | | | || ||||| |||| | ||||| | Sbjct 3205 CAAAGAACTCCCCAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGC 3264 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGAC 71263 |||||||| || | | |||| || ||||| || ||||| || || ||||| | || Sbjct 3265 TTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACA-AC 3323 Query 71264 TA-TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 | |||||||| |||| | | | ||||| || || || | ||||| |||||||| || Sbjct 3324 GAGTTTCTAAGGCCATACTTAGCT-ATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TC 3381 Query 71322 C----GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATC 71377 | || ||| || | || ||||||| ||| | Sbjct 3382 CTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAAC 3441 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 || | |||| || || || || | || || ||||| |||||||| || || | || Sbjct 3442 CTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAG 3501 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAAT 71496 |||| || || || || || |||| ||| || | | || || || ||| || Sbjct 3502 CATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATAT 3560 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 ||||| | || | ||||| ||||| | ||||| || || | ||| | || || Sbjct 3561 GGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTA 3620 Query 71557 TGTCTCTTATTAGAAATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 |||||| |||||| | | || ||||||||||||||||| | ||| |||| || Sbjct 3621 TGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTC 3679 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 ||| ||||| || | ||| || || || || | ||| || |||||| ||| || Sbjct 3680 ATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTT 3739 Query 71676 AT-----CTATTACAAACACGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTC 71729 || |||| | || ||| || | | |||||||| |||||||| || ||||| Sbjct 3740 ATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTC 3799 Query 71730 ATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 || | | | ||| | |||||||| || || ||||| ||| | || || || || | Sbjct 3800 GTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAG 3859 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 |||||||||||| || || ||| ||||||||||| |||||| |||||||| || Sbjct 3860 ATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGT 3919 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 ||||| || || | || | || ||| | | | || || ||| | ||| | Sbjct 3920 CTCAATTTGTGACTGTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGTTTTCCTACC 3979 Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTC 71969 | |||| |||| || ||| ||||||| || || | ||| ||||| ||| | Sbjct 3980 GCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTG 4039 Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 | ||||| ||||||| |||||||| |||| ||| | | |||| | | ||||| | Sbjct 4040 CATCCCAGGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTC 4099 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||| || |||||||| ||||| || ||| ||||| ||| | | ||| |||||| || Sbjct 4100 CATGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTT 4159 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || ||||| | | || | || ||| || ||| | |||||| |||||||| || Sbjct 4160 ACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATA 4219 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 | || | | ||| || ||| ||| || || || | || | || || | ||| Sbjct 4220 GACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATT 4279 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 ||| || | || ||||||||| | |||||| || |||||| || || ||| || Sbjct 4280 ATACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGA 4339 Query 72270 TCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||| || || ||||| || | | |||| ||| || || | || || Sbjct 4340 TCCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATT 4399 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 ||| ||| |||| |||||| | ||||| || || ||||| ||| || || | Sbjct 4400 TGCACATTTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAAT 4459 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 |||||| ||||| || | ||| ||| || ||||| ||||| || |||| ||| || Sbjct 4460 AAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATG 4519 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATT 72508 ||||| | || | ||| || || | || || ||||| |||| |||||| | |||| Sbjct 4520 AGTAAAATACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATA 4579 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 | || || || | ||| | |||||| | || || || ||||| || ||||| | || Sbjct 4580 G-TGGATACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCAT 4638 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | || || || ||| |||| | ||| |||||| ||||||||| ||| ||| | Sbjct 4639 CGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAAT 4698 Query 72629 CTCGTTCGTAAAT-AATAACCGAATTGAGTTTATCCTT 72665 | || | |||| |||||| || || | | |||| || Sbjct 4699 CACG-GCTAAAATCAATAACTGAGTTTAATCTATCTTT 4735 >seq240 Length=77866 Score = 174 bits (192), Expect = 2e-38 Identities = 354/511 (69%), Gaps = 20/511 (4%) Strand=Plus/Minus Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||| || ||||| || | ||| ||||||| ||||| || |||||||||||||||| | | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CAC 77806 Query 42166 AAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 42224 ||| | | |||||||| ||||| ||||| ||||| |||| |||| | ||| ||| || Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAA 77746 Query 42225 A--ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | |||| | | | || ||||||||| ||||| || ||||| |||| || || Sbjct 77745 ATGACCG--ATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGG 77688 Query 42283 CATCGTTTCTATGGCATTAAAGAGA---TAGtttttttCATTACTATCTTTAACATATGT 42339 | | ||| || | ||| || | | | || |||| |||| | |||| Sbjct 77687 TAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTG 77631 Query 42340 ATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTA 42399 ||| || ||||| ||| |||| ||||| | || || || || |||||||| || Sbjct 77630 ATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA 77571 Query 42400 GAAACAT-CTGGCCTCGGTAACCTGTA-CTTCTGTACAAAATCGTTCAGCTAAATTTTCG 42457 | |||| || || || | || | || || || ||||| | ||||||| || || Sbjct 77570 -ATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTCTCC 77513 Query 42458 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC- 42516 | || ||||| ||||| ||||||||||| || || |||| ||| ||||||| |||||| Sbjct 77512 ATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCT 77453 Query 42517 -GTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCG 42575 || | |||| | | |||||| | || || | | || ||||| |||||| | | Sbjct 77452 GGTTC--CTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAG 77395 Query 42576 TCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 |||||||||| |||||| | ||||| ||||| Sbjct 77394 TCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 109 bits (120), Expect = 7e-19 Identities = 295/436 (68%), Gaps = 23/436 (5%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 41773 |||||| ||| |||||| | ||||| | | ||||| || |||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 370 Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||||||||| | || ||||| || ||||| ||||| || |||| ||||| ||| Sbjct 369 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 310 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| ||||| || ||||| || | ||| || | | | || | | Sbjct 309 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 250 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || | ||| || | ||||| |||||| ||| | | | ||||||| || || || Sbjct 249 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 190 Query 41954 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 189 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 132 Query 42012 TAGATCTT--ACTGTTTCTTCACTCGGTGGA--TACAATAAATG-TTTAAACATCAAACA 42066 | |||| ||| | ||||| || || | | |||| |||| | | ||||| Sbjct 131 T--TTCTTGAACTCT---TTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACA 77 Query 42067 TGCGAAAT-CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 42125 | | || | |||| || | ||| ||||||||| |||| ||| || ||||| || | || Sbjct 76 TCCAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 18 Query 42126 CGGGCATTAGGCCACG 42141 | ||||||| ||||| Sbjct 17 CAGGCATTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136876180520