Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq240 138 1e-27 >seq240 Length=77866 Score = 138 bits (152), Expect = 1e-27 Identities = 344/513 (67%), Gaps = 17/513 (3%) Strand=Plus/Minus Query 13190 AGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 || || || |||||||||| || ||||| | || ||||| |||| ||||||||||||| Sbjct 77866 AGTTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA 77807 Query 13250 GCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCA 13309 ||| || ||||| || || ||||||||||| ||| | || | ||||| || Sbjct 77806 CAAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCA 77747 Query 13310 TACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCA 13368 | | | ||| ||| || ||||||||| | ||||| | ||| || |||||| || Sbjct 77746 AATGACCGATTATTATTC---ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCT 77690 Query 13369 GTTCATATTTTCTATTGCGTTAAATAAATAAttt-----ttttCCTTACTGTCTAAAATA 13423 | | | || | |||||| | || ||| |||| | || |||| ||| | ||| Sbjct 77689 GGT-AAATGTGATATTGCTTCAA--AAAGCATTTGGCGATCTT--TTAC-ATCTGATATA 77636 Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 || ||| || || | | ||| |||| ||||| | ||||| || ||||| || Sbjct 77635 TATTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAAT 77576 Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTT 13543 |||||| | |||||| ||| || |||| || |||| || | |||||||| Sbjct 77575 CCATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTC 77516 Query 13544 TCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttt 13603 || | || || || |||||||| |||||||| || | | | |||||||| | |||| Sbjct 77515 TCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT 77456 Query 13604 tC-GTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAAC 13662 || | || || |||||| ||||||| | || | |||||||| ||| || | Sbjct 77455 TCTGGTTCCTTTAAACTTT-CCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGC 77397 Query 13663 GGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 |||||||| || || | | || || ||||| Sbjct 77396 AGTCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980945030354