Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq240 107 2e-18 seq141 105 7e-18 >seq240 Length=77866 Score = 107 bits (118), Expect = 2e-18 Identities = 318/486 (65%), Gaps = 15/486 (3%) Strand=Plus/Minus Query 21517 TTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGC 21576 |||||||||||||||||| || ||||||||||| | || || | ||||||||| | | | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CAC 77806 Query 21577 AAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGT 21635 ||| ||| || ||||| || || || ||||| ||| ||| ||| || || ||| | Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAA 77746 Query 21636 ATG-TAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAA-TACA 21693 ||| |||| || || ||||| ||| |||||||| |||||| ||||| | | Sbjct 77745 ATGACCGATTATTATTC----ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCT 77690 Query 21694 ATCAATTGT-ATCAATAGCTTTTAAAAGATGAttt--ttttCATCTACATCGGTTATGNN 21750 || ||| || || |||| ||||| |||| || | |||||| | ||| Sbjct 77689 GGTAAATGTGAT--ATTGCTTCAAAAAG--CATTTGGCGATCTTTTACATCTGATATATA 77634 Query 21751 NNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCC 21810 ||| ||||| || || | || || || || |||||||| Sbjct 77633 TTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCC 77574 Query 21811 GTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTC 21870 ||| | ||| || ||| ||||| ||| |||| | ||| ||||| || Sbjct 77573 ATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTC 77514 Query 21871 ATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 |||| ||||||||||| || ||||||||||| || | || ||| ||||||| | ||| Sbjct 77513 CATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC 77454 Query 21931 GTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGT 21990 || |||| ||| ||||||| | || | |||||||| ||||| | || Sbjct 77453 TGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGT 77394 Query 21991 CCAAAA 21996 |||||| Sbjct 77393 CCAAAA 77388 >seq141 Length=3141 Score = 105 bits (116), Expect = 7e-18 Identities = 291/442 (66%), Gaps = 8/442 (2%) Strand=Plus/Minus Query 21112 TATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGA 21171 ||| ||| | ||| |||||| |||||||||| ||||| | |||| | | | Sbjct 442 TATGAAACTGGTTAGTTAAAATTCAGCATCTAGATTGAAAATTTGGTCTTTCTGATGAGC 383 Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231 ||||| ||| |||| || ||| |||| ||| || ||||| || || || |||| Sbjct 382 CATAACTCCTGCCATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTG 323 Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATT-TTCAGATTTAAATATTTTATTACAAC 21290 ||||| ||| ||||| ||||||||||||| | | ||| | | ||| || | Sbjct 322 TAATGAAATAAGATCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAAC-AT 264 Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 | ||| | | | ||| | ||| || |||||||| |||||||| ||||||| | ||| Sbjct 263 CTAGTGCAAACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAAT 204 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 |||| || || | | |||||| | | | ||||| | ||| | || | Sbjct 203 TCATCCCAATGAGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAG 144 Query 21411 CTTCAACAATTATATTT---ATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAA 21467 |||| | || || | | | | | | ||| | | ||| |||| |||| Sbjct 143 CTTCTGCTATAATTTCTTGAACTCTTTCACATG---GAAGACGATTATTTAATGTTTTAT 87 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 | | |||||| |||| || ||| | ||||||||| ||| ||||| ||||||||||| Sbjct 86 AAAGTAAACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAA 27 Query 21528 ATGTTAAACCGGGCATTAATCC 21549 ||||||| || ||||||||||| Sbjct 26 ATGTTAATCCAGGCATTAATCC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531898958293480