Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq46 325 5e-84 seq240 154 2e-32 seq141 111 2e-19 >seq46 Length=25720 Score = 325 bits (360), Expect = 5e-84 Identities = 1216/1888 (64%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 2859 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 2918 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 2919 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 2978 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 2979 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 3038 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62233 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 3039 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 3097 Query 62234 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCATCAT 62289 | |||| |||| |||| | || || || || | || | |||| |||| Sbjct 3098 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 3156 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 3157 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 3216 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 3217 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 3276 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 3277 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 3336 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 62525 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 3337 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 3395 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62585 || |||||| | ||| |||| || || ||| | |||| || Sbjct 3396 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 3455 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 3456 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 3515 Query 62646 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 3516 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 3574 Query 62705 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 ||||| || || | ||||| || || | ||| | || ||||||||| |||||| Sbjct 3575 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 3634 Query 62765 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 3635 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 3693 Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTAC 62878 ||| || || || || | || || |||||| ||| | || |||| | Sbjct 3694 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 3753 Query 62879 AAACATGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937 || | | || | | |||||||| |||||||| || ||||| || | | | || Sbjct 3754 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 3813 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 3814 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 3873 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 3874 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 3933 Query 63058 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--CTTTCTCT 63115 || | || ||| | | | || || ||| | || || | | | |||| | Sbjct 3934 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 3991 Query 63116 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 ||| ||||||| ||| ||| || || | ||| ||||| |||| | || ||||| Sbjct 3992 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 4049 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 4050 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 4109 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 4110 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 4169 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 || | | || | || ||| || ||| | |||||| |||||||| || | || | Sbjct 4170 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 4229 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 4230 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 4289 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 | ||||||||| | ||| || || ||||||| ||||| ||| || ||| || Sbjct 4290 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 4349 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 4350 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 4409 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 |||| || ||| | || || || || ||||| ||| || || | |||||| Sbjct 4410 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 4469 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | Sbjct 4470 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 4529 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCC 63712 || | ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 4530 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 4588 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 | ||| | |||||| | ||| || || ||||| || ||||| | | | || Sbjct 4589 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 4648 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 4649 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAA 4707 Query 63833 AAT-AATAACCGAGTTGAGTTTATCCTT 63859 ||| |||||| ||||| | | |||| || Sbjct 4708 AATCAATAACTGAGTTTAATCTATCTTT 4735 >seq240 Length=77866 Score = 154 bits (170), Expect = 2e-32 Identities = 351/514 (68%), Gaps = 22/514 (4%) Strand=Plus/Minus Query 33343 AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAA 33402 ||||| || ||||| || | ||| ||||||| ||||| || |||||||||||||| | | Sbjct 77866 AGTTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA 77807 Query 33403 GCGAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC 33461 | || | | |||||||| ||||| ||||| |||||| |||| |||| | ||| ||| | Sbjct 77806 -CAAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGC 77748 Query 33462 ATA--ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 33519 | | |||| | | || ||||||||| ||||| || ||||| |||| || Sbjct 77747 AAATGACCGAT--TATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCT 77690 Query 33520 GGCATCGTTTCTATGGCATTAAAGAGA---TAGtttttttCATTACTATCTTTAACATAA 33576 || | | ||| || | ||| || | | | || |||| |||| | ||| Sbjct 77689 GGTAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATAT 77633 Query 33577 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33636 ||| || ||||| ||| |||| ||||| | || || || || |||||||| Sbjct 77632 TGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCA 77573 Query 33637 TAGAAACAT-CTAGCCTCGGTAATCTGTA-CTTCTGTACAAAATCGTTCCGCCAAATTTT 33694 || | |||| ||||| || || || | || || || ||||| | | || || || | Sbjct 77572 TA-ATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTCT 77515 Query 33695 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 33754 | | || ||||| ||||| ||||||||||| || || |||| ||| ||||||| |||| Sbjct 77514 CCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT- 77456 Query 33755 CGTCTGGT---GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCA 33811 |||||| ||| | | |||||| | || || | | || ||||| ||||| Sbjct 77455 --TCTGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTG 77398 Query 33812 CTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 | ||||||||||| || ||| | ||||| ||||| Sbjct 77397 CAGTCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 111 bits (122), Expect = 2e-19 Identities = 292/433 (67%), Gaps = 17/433 (4%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAA--GAAAAATGATTATCTTCT--TGAGACATAACTCCCATTT 33013 |||||| ||| |||||| | ||||| | | | |||| |||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 369 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 ||||||||||| | || ||||| || ||||| |||||||| |||| ||||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||| ||||||| ||||| || ||||| || | ||| || | | | || | | | Sbjct 308 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 249 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 | | ||| || || ||||| |||||| ||| | | | ||||||| || || || | Sbjct 248 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 189 Query 33194 TAACTGG--AAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || || | || | || ||| |||| |||||| || || |||| |||||| Sbjct 188 CTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 131 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATG--CAATAAATG-TTTAAACATCAAACATGC 33308 | ||| | ||||| || || | | | |||| |||| | | |||||| | Sbjct 130 TTCTTGAAC---TCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCC 74 Query 33309 GAAAT-CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 || | |||| || | ||| || |||||| |||||||| || ||||| || | ||| | Sbjct 73 AAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAG 15 Query 33368 GCATTAGGCCACG 33380 |||||| ||||| Sbjct 14 GCATTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945043045320