Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq141 194 4e-44 seq46 190 5e-43 seq1 87.8 5e-12 >seq141 Length=3141 Score = 194 bits (214), Expect = 4e-44 Identities = 276/386 (72%), Gaps = 3/386 (1%) Strand=Plus/Plus Query 22566 ACGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCT 22625 ||||| | | ||||| || |||| ||||| ||||| |||| ||||||| ||| | Sbjct 1 ACGTGGATTAATGCCTGGATTAACATTTTCTAATGAACTAATATCTAGAGATGAAGGTAT 60 Query 22626 TCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGA 22685 |||| | || |||| ||| | || ||| || ||| | | | || ||||||| ||| Sbjct 61 TCATGCGGACTTTGGATGTTTACTTTATA--AAACAT-TAAATAATCGTCTTCCATGTGA 117 Query 22686 AACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGC 22745 || || | || ||||| || | || |||||| |||||||| |||| | || || | Sbjct 118 AAGAGTTCAAGAAATTATAGCAGAAGCTGTTGAAGTTGAACGTACATTTTTATGTGATTC 177 Query 22746 GTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGT 22805 ||||| ||| ||||||||| || ||| | || |||| ||||||| ||||||| Sbjct 178 ATTACCTGTAGATCTCATTGGGATGAATTCTAGATTAATGGCCCAATATATTGAATTTGT 237 Query 22806 TGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATT 22865 ||| |||||| || | || |||| | | | ||||| || || ||| |||||||| Sbjct 238 TGCTGATCGTTTACTGTTTGCACTAGATGTTCCAAAGTTATACAATGTCACGAATCCATT 297 Query 22866 TGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGG 22925 ||| |||||||| ||||||||| | |||| || || || || || || ||| |||| | Sbjct 298 TGATTGGATGGATCTTATTTCATTACAAGGTAAAACTAACTTTTTTGAGAAACGAGTAGC 357 Query 22926 TGAATACCAAAAAGCAGGTGTTATGG 22951 ||||||||||| ||||| ||||||| Sbjct 358 TGAATACCAAATGGCAGGAGTTATGG 383 >seq46 Length=25720 Score = 190 bits (210), Expect = 5e-43 Identities = 615/943 (65%), Gaps = 10/943 (1%) Strand=Plus/Minus Query 363373 GATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTAT 363431 ||| | || ||||| |||||| | | |||||| | || | ||| || || || | Sbjct 4699 GATTTTGAATATGACTATTTT-GCTTTTAAGACTCTAGAAAGATCTTATTTACTGCGGGT 4641 Query 363432 CAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCA 363491 | ||| | | ||||| ||| | || || || | |||||| | || | ||||||||| Sbjct 4640 CGATGATAAGATTGTGGAAAGGCCACAACACCTATTAATGAGAGTCTCCTGTGGTATCCA 4581 Query 363492 TTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC-A 363550 | || | ||||| || |||||||| ||| | || || | | ||||| | Sbjct 4580 CTATGGTAATATAGATGCAGCAATTGAAACTTATGAACTGCTCTCT-CAGAAGTATTTTA 4522 Query 363551 CGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCT 363610 | || || || || ||| | | ||||||||| |||| | ||||||||||| ||||| | Sbjct 4521 CTCATGCTACTCCGACATTATTCAATGCTGGTACTCTTCGCCCACAGATGTCCTCTTGTT 4462 Query 363611 TTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTG 363670 || |||| |||||| || || || || || || || ||||| ||||| ||||| |||| Sbjct 4461 TTATTCTCAAAATGTCAGATGACTCAATTGATGGCATTTTTGATACACTAAAGAAATGTG 4402 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAG 363729 | ||| ||||| ||| || ||| | || || | | ||| | || || ||| Sbjct 4401 CAAATATAAGCAAGACTGCTGGTGGATTAGGGGTGGCTGTTTCTAATATACGAGCTGCAG 4342 Query 363730 AA-CAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 | || ||||| || || || || || ||||| | |||| ||||| ||||| Sbjct 4341 GATCA--TACATCCGTGGTACTAATGGTAGGTCTAATGGTTTAATTCCAATGCTGCGTGT 4284 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 || | | |||| || | || || ||||| ||||||||||| | || || || |||| Sbjct 4283 GTATAATGATACAGCACGTTATGTTGACCAAGGTGGAGGAAAAAGGAAGGGTGCACTTGC 4224 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 | | ||| | || ||| ||||| ||| |||| || ||| | ||| | |||| ||| Sbjct 4223 TGTCTATTTGGAACCTTGGCATGCGGATGTTTTGGAATTTATAGAGATAAGGAAGAACCA 4164 Query 363909 GGGAAAAGAGGAATTGCG-TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 || |||||||| || | ||| |||||| | || ||||| ||| | |||| | | Sbjct 4163 TGGTAAAGAGGAGATGAGATGC-CGTGATATATTTCCAGCACTATGGATACCTGATCTGT 4105 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 | ||| || | || ||| | | || ||| || | | || || | ||||| || | Sbjct 4104 TCATGGAGAGAGTAGAGAAGGATGCAAACTGGACATTAATGTGTCCTGATGAATGCCCTG 4045 Query 364028 GTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGG 364087 | | ||||| ||||||||| | | | | |||| ||| | |||||| || | Sbjct 4044 GGATGCAAGATGTCTGGGGTGACCAATTTAAAGAATTATATGAACACTATGAAAAAGAAG 3985 Query 364088 GAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 | | | | || |||||| ||||| | | |||||||| | | | || || | Sbjct 3984 GTCGCGGTAGGAAAACAATTAAAGCACAAAGTTTGTGGTTTGCATTGCTACAGTCACAAA 3925 Query 364148 TTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGC 364207 |||||||||| || || | ||| | || || ||| | || || || ||| || | Sbjct 3924 TTGAGACAGGTACTCCATTTATTTGCTATAAGGATGCAGCTAATCGTAAAAGCAATCAAC 3865 Query 364208 AGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | | || ||||| || | ||||| |||||||| || ||||| || || || | Sbjct 3864 AAAATCTGGGTACGATAAAATCTAGCAATCTATGTACAGAAATTATGGAGTATACTAGTT 3805 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | ||||| || || |||||| | || || || | ||| || Sbjct 3804 CAAACGAGGTCGCAGTTTGTAACTTGGCATCTATAGGGCTCCC 3762 >seq1 Length=119889 Score = 87.8 bits (96), Expect = 5e-12 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 |||| ||| ||||||||||| ||||| ||||| |||| | | | | ||| | Sbjct 107531 TAAAATTTCCTCTGAAAATCCTGTTCCTATCTTACATATTGTCTCATAAATTTCACTATT 107472 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 ||||| ||| || || | || ||| ||||||| |||| | ||| || ||| Sbjct 107471 TGGATTATAAACTGCCAATAGAAATGTTCCATATATACCACACCTTTTACCTTTACCATG 107412 Query 145652 ATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTT 145711 | | | || || || |||| |||| |||||| || || ||| |||||| || || Sbjct 107411 AAATGCAGCTATAGGGACAACATCAATACTATCCATAATACCATCAATATAATCTTTCTT 107352 Query 145712 AAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGA 145771 | ||| |||||||| | |||||||| || |||||||| || | || || | || | Sbjct 107351 TATTTTAAGCCAATTTAAGGAACGTTTAGAAGGTTCATAACTTGCATTTTCATTTAAAGT 107292 Query 145772 TTTTACCATTAGCCCCTC 145789 || ||||||| ||||| Sbjct 107291 CTTAACCATTAATCCCTC 107274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348974316614