Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq46 338 8e-88 seq240 154 2e-32 seq141 131 2e-25 >seq46 Length=25720 Score = 338 bits (374), Expect = 8e-88 Identities = 1219/1888 (65%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 2859 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 2918 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 2919 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 2978 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | ||| Sbjct 2979 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 3038 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62088 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 3039 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 3097 Query 62089 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCATCAT 62144 | |||| |||| |||| | || || || || | || | |||| |||| Sbjct 3098 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 3156 Query 62145 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62204 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 3157 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 3216 Query 62205 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 62264 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 3217 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 3276 Query 62265 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62324 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 3277 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 3336 Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 62380 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 3337 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 3395 Query 62381 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62440 || |||||| | ||| |||| || || ||| | |||| || Sbjct 3396 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 3455 Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 3456 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 3515 Query 62501 TCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 3516 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 3574 Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 ||||| ||||| | ||||| || || | ||| | || ||||||||| |||||| Sbjct 3575 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 3634 Query 62620 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62678 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 3635 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 3693 Query 62679 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTAC 62733 ||| || || || || | || || |||||| ||| | || |||| | Sbjct 3694 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 3753 Query 62734 AAACATGTTCAATGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792 || | | | | | |||||||| |||||||| || ||||| || | | | || Sbjct 3754 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 3813 Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 3814 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 3873 Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 3874 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 3933 Query 62913 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--TTTTCTCT 62970 || | || ||| | | | || || ||| | || || | | |||| | Sbjct 3934 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 3991 Query 62971 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA 63028 ||| ||||||| ||| ||| || || | ||| ||||| |||| | || ||||| Sbjct 3992 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 4049 Query 63029 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63088 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 4050 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 4109 Query 63089 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 4110 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 4169 Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208 || | | || | || ||| || ||| | |||||| |||||||| || | || | Sbjct 4170 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 4229 Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 4230 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 4289 Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 | ||||||||| | |||||| || ||||||| || || ||| || ||| || Sbjct 4290 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 4349 Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388 || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 4350 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 4409 Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 |||| |||||| | ||||| || || ||||| ||| || || | |||||| Sbjct 4410 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 4469 Query 63449 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508 ||||| || | ||| ||| || ||||| ||||| || |||| ||| |||||||| | Sbjct 4470 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 4529 Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCC 63567 || | ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 4530 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 4588 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63627 | ||| | |||||| | ||| || || ||||| || ||||| | | | || Sbjct 4589 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 4648 Query 63628 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 4649 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAA 4707 Query 63688 AAT-AATAACCGAGTTGAGTTTATCCTT 63714 ||| |||||| ||||| | | |||| || Sbjct 4708 AATCAATAACTGAGTTTAATCTATCTTT 4735 >seq240 Length=77866 Score = 154 bits (170), Expect = 2e-32 Identities = 350/512 (68%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 32761 ||| || ||||| || | ||| ||||||| ||||| || |||||||||||||| | | | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CAC 77806 Query 32762 AAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 32820 ||| | | |||||||| || || ||||| ||||| |||| |||| | ||| ||| || Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAA 77746 Query 32821 A--ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | |||| | | || ||||||||| ||||| || ||||| |||| || || Sbjct 77745 ATGACCGAT--TATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGG 77688 Query 32879 CAT-TGTCTCTATAGCATTAAAGAGA---TAGtttttttCATTACTATCTTTAACATATG 32934 | ||| ||| || | ||| || | | | || |||| |||| | |||| Sbjct 77687 TAAATGTGA-TATTGCTTCAAAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATT 77632 Query 32935 TATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT 32994 |||||| ||||| ||| |||| ||||| | || || || ||||||||||| | Sbjct 77631 GATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCAT 77572 Query 32995 AGAAGCATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCA 33053 | | |||||| || || || | || || || ||||| | | ||||| || || Sbjct 77571 AATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTCTCC 77513 Query 33054 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 33113 | || ||||| ||||| ||||||||||| || || |||| ||| ||||||| |||| Sbjct 77512 ATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT--- 77456 Query 33114 TCTGGT---GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 33170 |||||| ||| | | |||||| | || || | | || ||| | ||||| | Sbjct 77455 TCTGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCA 77396 Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 ||||||||||| || ||| | ||||| ||||| Sbjct 77395 GTCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 131 bits (144), Expect = 2e-25 Identities = 300/436 (69%), Gaps = 23/436 (5%) Strand=Plus/Minus Query 32315 TTAAAAGTCAACATCTAGA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 32369 |||||| ||| |||||||| ||||| | | ||||| || |||| ||||||||| Sbjct 427 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 370 Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||||||||| | || ||||| || ||||| ||||||||||||| |||||| ||| Sbjct 369 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 310 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| |||||||| || ||||| || | ||| || | | | || | | Sbjct 309 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 250 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 || | ||| || |||||||| |||||| ||| | | | ||||||| || || || Sbjct 249 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 190 Query 32550 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 189 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 132 Query 32608 TAGATCTT--ACTGTTTCTTCACTCGGTGGA--TACAATAAATG-TTTAAACATCAAACA 32662 | |||| ||| | ||||| || || | | |||| |||| | | ||||| Sbjct 131 T--TTCTTGAACTCT---TTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACA 77 Query 32663 TGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 32721 | | || | |||| || | ||| || |||||| |||| ||| || ||||| || | || Sbjct 76 TCCAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 18 Query 32722 CGGGCATTAGGCCACG 32737 | ||||||| ||||| Sbjct 17 CAGGCATTAATCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629806049200