Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq240 136 4e-27 >seq240 Length=77866 Score = 136 bits (150), Expect = 4e-27 Identities = 343/504 (68%), Gaps = 23/504 (5%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 |||||||| || || | | ||| |||||||| ||||||||||| | | ||| || ||| Sbjct 77854 AATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCA 77795 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACG--TTCGGCAAAATTTGCGG 93260 ||||| || |||||||| || || |||| |||| | ||| ||| ||||| || Sbjct 77794 GAAAACAAGATACCTTCAACTGCA-CAAAAGCCA-ATTACTCTTTCTGCAAA---TGACC 77740 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG-TGTT 93319 |||| | | ||||| ||| ||||| || || || | |||| |||| ||| Sbjct 77739 GATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGT- 77681 Query 93320 TCGATA--GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 |||| || | ||| || | || || | |||| ||| ||| ||| |||| Sbjct 77680 --GATATTGCTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATTGATCAATTA 77623 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT- 93436 | || ||||| ||||| || | | |||||| |||||||| ||||| || | |||| Sbjct 77622 AAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATT 77564 Query 93437 CTAGCTTCCGTGATCTGCA-CTTCTTGAGAAAATCTCT--CTACGAGATTTTCATTGACT 93493 |||||||| || || | || ||| | ||||| | ||| || | | |||| || Sbjct 77563 CTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTA--AGTTCTCCATT-ACA 77507 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC- 93552 || ||||| ||||||||||| || || | || || ||||||||||| || || Sbjct 77506 ATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCC 77447 Query 93553 TTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 ||||| ||| |||||||| | || | | ||| | ||||| |||||||||| Sbjct 77446 TTTAAACTT-TCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAA 77388 Query 93613 CGATGCTTCTGCTTTTTTGTACAT 93636 || |||||| ||||||||||||| Sbjct 77387 TGAGGCTTCTTCTTTTTTGTACAT 77364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858871869480