Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq211 141 8e-29 seq213 138 1e-27 >seq211 Length=153182 Score = 141 bits (156), Expect = 8e-29 Identities = 179/245 (73%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || |||||||| |||||||| | || |||||||| ||| | | Sbjct 121571 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 121512 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| || || || |||||||| |||||| Sbjct 121511 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 121452 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| | |||||| || || | || ||||| || Sbjct 121451 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 121392 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT-TTCCATTTTA 22457 ||||| || ||||| || | ||||||||||| || || | || |||| || || || | Sbjct 121391 ATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGGTTCTTGCAATTAA 121332 Query 22458 AAATT 22462 | ||| Sbjct 121331 ATATT 121327 >seq213 Length=131909 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| ||||| || ||||| | || | ||||| ||| | | Sbjct 113800 ATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACATTAGAAGTTGAACCTTCT 113741 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| || |||||||||||||| || || || |||||| Sbjct 113740 GATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAGGGAATACCTCCAGATCAA 113681 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || || | || ||| | | || | || || ||||| Sbjct 113680 CAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACTTTATCAGACTACAAT 113621 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || || || |||||||||||||| | || || || ||| || Sbjct 113620 ATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGTGGTGGTGTT 113570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726583024505