Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq46 84.2 3e-11 >seq46 Length=25720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 345/536 (64%), Gaps = 6/536 (1%) Strand=Plus/Plus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 ||| | |||||| || || | |||| ||||| || || | |||||| ||||| || Sbjct 3401 CCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGG 3460 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || | ||| || | || | || || || || || || | || ||||||||||| Sbjct 3461 ACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAA 3520 Query 116184 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGA-CGGCACAAAATAA 116242 || | |||| | | | |||| || | || ||| | | || | | | | |||| Sbjct 3521 TATCTCAACATTTAGTTTCCTGGCATCTTTAGATTCATATG-GATATCTCAATATCATAA 3579 Query 116243 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTC 116302 | ||| || |||||||| || || | |||| ||| | |||||||| ||||||| || Sbjct 3580 AACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGAC-CTC 3638 Query 116303 GAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 116361 || ||| | |||||| | | ||| ||||| ||||||||| | || | Sbjct 3639 CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCT 3698 Query 116362 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATAC 116421 |||||| | ||||| ||||||| |||| || | | | || || ||| | Sbjct 3699 ACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAA 3758 Query 116422 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 116481 ||| || | || || |||| ||||| || | | ||| | | ||| ||||| Sbjct 3759 CGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTATACTCC 3818 Query 116482 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 116541 |||||||| ||||| | ||| | || || || |||| || | |||| ||| ||| Sbjct 3819 ATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGA-TTGCTTTT 3877 Query 116542 GTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT 116596 | ||| |||||||| ||| ||| |||| || || ||||| |||| |||| Sbjct 3878 ACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 3933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505075731320