Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq199 109 6e-19 seq123 84.2 3e-11 >seq199 Length=54927 Score = 109 bits (120), Expect = 6e-19 Identities = 317/472 (67%), Gaps = 22/472 (5%) Strand=Plus/Minus Query 167318 TGATATCGTCAGGGTTAAATGGGGGGATGTAGCAACTGAAACCCGTACCAATACCTTCAG 167377 ||||||| | ||||||| | || | | ||||| | || ||||||||||| |||| Sbjct 24647 TGATATCTTTAGGGTTATAGTTTGGAACAGAACAACTCCATCCAGTACCAATACCATCAG 24588 Query 167378 TACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAAGTCGGGTTCAATGGAACGAC 167437 |||||| || || ||||| || | |||| | || || |||||||| ||| Sbjct 24587 CACCGTTAACTAAGACCATTGGAATGATTGGTACATAGAATAAAGGTTCAATTTGTTGAC 24528 Query 167438 CATCATCATCCAAGTAG-TTGAGAATGG--CATCATCTTTGGGATCGAAGAGCTTTCGAG 167494 ||||||| | || || || | ||||| ||||| ||| || ||| | | |||| Sbjct 24527 CATCATCTTGCAGATATATTAACAATGGATCATCAGCTTCTGG---GAAAATATAACGAG 24471 Query 167495 -CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACGCATCCTTGCCACCCATG 167553 || | | ||| || ||||| ||||| | | | |||||||||||||| | Sbjct 24470 TCCAAGTAGATAATTTT-GTAAATATGTAACGGGCAGCACTTGCATCCTTGCCACCT-TC 24413 Query 167554 AGGCGTG-TACCAAATTGACCACATGGCTCGAGAAGATTGA---TGTTA-TTCGACCCCG 167608 | || ||||||||||||||||||||| || | || | ||||| ||| | | Sbjct 24412 TTTCCTGCTACCAAATTGACCACATGGCTGAAGTAAGTTCAAATTGTTACTTCCAAC--- 24356 Query 167609 TATAATCGTTGGCCAACTTGACGATCGT-TTCAGCGAGGGAAACTTCGCCGTGGTGGTAA 167667 | |||| | |||| || || ||||| || | | ||| |||| || || ||||| Sbjct 24355 -AAAATCTTGCGCCATATTTACAATCGTACTCTG-TAAAGAAGCTTCACCATGATGGTAT 24298 Query 167668 GCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCATCTTTGAGATTC 167727 ||||| | |||||| ||||| | || || ||||| || ||||| |||| || || ||| Sbjct 24297 GCACTATGTTCAGCAACATAACCAGCTAATTGTGCTACTTTCATTTCATTATTCAGCTTC 24238 Query 167728 TTTTGGAAACA-TGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCATCT 167778 |||| ||||| ||||| | ||| || | ||| ||| || | |||||| Sbjct 24237 TTTT-TAAACACAGAATATAAAACTTTCCTTTGTCCAGGCTTTAATCCATCT 24187 >seq123 Length=7514 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 6/118 (5%) Strand=Plus/Minus Query 15698 AACATTTCCA---ATTTCGATCACAATTGAGACAACTCACAAAAGTTGTCATGGGTTCAT 15754 || ||||||| ||||| ||||||| ||||||| ||||||||| ||||| || || | Sbjct 1036 AAAATTTCCATCTATTTC---CACAATTCAGACAACGCACAAAAGTAGTCATTGGCTCGT 980 Query 15755 CAGCTGACCTCGTCTGTAACTGATAATAAGTTGTTTTCATAGACTTACAACGTCCACA 15812 |||||||||| || || | ||| ||||||| ||||| | | ||||| |||||| Sbjct 979 CAGCTGACCTAGTTTGCATTTGAAAATAAGTAGTTTTATTCGTTTTACACTTTCCACA 922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973960670600