Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq46 118 1e-21 seq199 105 8e-18 >seq46 Length=25720 Score = 118 bits (130), Expect = 1e-21 Identities = 689/1088 (63%), Gaps = 24/1088 (2%) Strand=Plus/Plus Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 |||||||||| ||||||||| || | | || | || || || || |||||||| || Sbjct 3255 GGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCT 3314 Query 106013 ATCAAAAGACTGTTACGAAGACCCT--TTTCCTTGATGCGTTCCTTGAGAACATCCCAGT 106070 | ||| | ||| | ||| || | || || | | ||||| || | |||||||| Sbjct 3315 ACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTC--TCCTTCAGTAAATCCCAGT 3372 Query 106071 --CGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGAC 106126 | ||| |||| |||| ||| |||| | | ||||||||| |||| ||| Sbjct 3373 TCCAAAGTCCTGAGGAGGGTTGCACATTCC-AGAGATCAAATTGTAGCAGACCTCTACTA 3431 Query 106127 GTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 106186 | || ||||| | |||||| ||||||| ||| | || || | ||||| || || Sbjct 3432 GCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCA 3491 Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 106246 || || | || | || || || ||||| || | |||| | | | |||| || | Sbjct 3492 TCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTGGCATCTTTA 3551 Query 106247 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 || ||| ||| || | | | ||||| ||| || |||||||| || || |||||| Sbjct 3552 GATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCA 3611 Query 106307 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTC 106365 | || || |||| || ||||||| | | ||| ||| || |||||| | | || Sbjct 3612 AGTGGCCTATGTCTCAGATTAGACCTCCT-GCACTCTGGAATAGGATAATATCCACGATC 3670 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 106425 ||| ||| |||||||| | || | | |||| | ||||| || |||| | |||| Sbjct 3671 AATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTTTTTAAAATC 3730 Query 106426 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 106485 || | | | || || ||| | || || | || |||||||| || ||||| Sbjct 3731 GAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAAC 3790 Query 106486 AGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAA 106544 || ||| | | | || || ||||| | |||||||||||| | ||| | || | Sbjct 3791 TGCGACCTCGTT-TGAACTAGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTA 3849 Query 106545 TCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGG 106604 |||| |||| ||| | ||| || || || || |||||||| ||| || | | Sbjct 3850 TCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATG 3909 Query 106605 GCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAA 106664 | || || ||||| | ||||||| || | ||| ||||| | | | || | || Sbjct 3910 GAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACA-AACTTTG--TGCTTTAA 3966 Query 106665 TGGCGT---TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | | | | | || || || || || | | || | ||| ||| | |||| Sbjct 3967 TTGTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAATTGGTCAC 4026 Query 106722 CCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || | || | || || || || || ||||| | | | ||| | || || Sbjct 4027 CCCAGACATCTTGCATCCCAGG-GCATTCATCAGGACACATTAATGTCCAGTTTGCATCC 4085 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACAC 106840 | ||| || | || |||||| || || || ||||| || | || ||| | ||| | || Sbjct 4086 TTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCAT 4145 Query 106841 CGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGC 106900 | ||| || | ||| ||||| | || ||| | || |||| | |||||| ||| Sbjct 4146 CTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGC 4205 Query 106901 CATGGCTCAAGATAGACTGCGATAGATCCCT---TTCGACGCCCAGCTTGATTTACATAG 106957 || || || | |||||| || | | |||| || | ||| |||| | ||||| Sbjct 4206 CAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAA 4265 Query 106958 CGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTC 107017 || ||||| | ||| | || || ||||||||||| | ||||| || |||||| || Sbjct 4266 CGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTA 4325 Query 107018 CCCCGAAT 107025 || || || Sbjct 4326 CCACGGAT 4333 >seq199 Length=54927 Score = 105 bits (116), Expect = 8e-18 Identities = 318/487 (65%), Gaps = 8/487 (2%) Strand=Plus/Minus Query 168227 TAAGGCTCTTTGAATATTCTCCTTGATATCCTTTGGATTGAATGGTGGTACATAGCAACT 168286 ||||||||||| | ||| | ||||||| || || || | ||| ||| | ||||| Sbjct 24670 TAAGGCTCTTTTCAGATTATTAATGATATCTTTAGGGTTATAGTTTGGAACAGAACAACT 24611 Query 168287 GAATCCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTA 168346 |||| ||||| ||||| || | || || || | |||||||| ||| |||| | || Sbjct 24610 CCATCCAGTACCAATACCATCAGCACCGTTAACTAAGACCATTGGAATGATTGGTACATA 24551 Query 168347 AAAGTCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCG 168406 || ||||||||| | |||||||| | || || | | | || ||||| Sbjct 24550 GAATAAAGGTTCAATTTGTTGACCATCATCTTGCAGATATATTAACAATGGATCATC--- 24494 Query 168407 AGGATCA---AAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCT 168462 || || || || | |||| || | | ||| |||||| || ||||| | | Sbjct 24493 AGCTTCTGGGAAAATATAACGAGTCCAAGTAGATAA-TTTTGTAAATATGTAACGGGCAG 24435 Query 168463 GAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGT 168522 | |||||||| ||||| | |||||||||||||||| || | ||| | || Sbjct 24434 CACTTGCATCCTTGCCACCTTCTTTCCTGCTACCAAATTGACCACATGGCTGAAGTAAGT 24375 Query 168523 TAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATA 168582 | | ||||| || | || | |||| || |||||||| | ||| || Sbjct 24374 TCAAATTGTTACTTCCAACAAAATCTTGCGCCATATTTACAATCGTACTCTGTAAAGAAG 24315 Query 168583 CTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCA 168642 |||||||||| ||||| ||| | || || ||||| | || | |||||| || |||| Sbjct 24314 CTTCACCATGATGGTATGCACTATGTTCAGCAACATAACCAGCTAATTGTGCTACTTTCA 24255 Query 168643 TTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGA 168702 |||||| || || ||||| | || || ||| | |||||||| ||| |||||| | Sbjct 24254 TTTCATTATTCAGCTTCTTTTTAAACACAGAATATAAAACTTTCCTTTGTCCAGGCTTTA 24195 Query 168703 GACCATC 168709 ||||| Sbjct 24194 ATCCATC 24188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978757191480