Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq46 338 7e-88 seq240 206 3e-48 seq141 136 4e-27 >seq46 Length=25720 Score = 338 bits (374), Expect = 7e-88 Identities = 1175/1835 (64%), Gaps = 52/1835 (3%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| ||| || || |||||| |||||||| ||||||||||||| ||||| Sbjct 2885 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 2944 Query 47069 ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATC 47128 | || || || | ||| | | | || ||||| |||||| ||||| ||| ||| Sbjct 2945 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 3004 Query 47129 AATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 ||| ||| |||||||| || |||||||| | || | ||||| || ||||| || Sbjct 3005 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGAC 3064 Query 47189 TGTTTTATAAATTTGTTTAATGTCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCC 47245 ||||| || | | ||| ||| || | | | | ||||||||| | ||| Sbjct 3065 GGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATT 3124 Query 47246 gttttctataattttgttttttaat---tcatttgaccaaagttttcgttcagttaatgt 47302 ||| | || || | | ||| | | |||| ||| ||| |||| ||| Sbjct 3125 GTTAGCAATGATACTCTGTTTCAGTCTCTCATC---CCATAGTCCCAATTCAAGTAAATC 3181 Query 47303 ttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTAT---A 47359 || || | ||||||||| |||| || || ||||| | ||| ||| |||| | Sbjct 3182 ATTCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATAC---ACGCCTATGATA 3238 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 |||||| ||| ||||||| | ||||||||| || | | |||| || ||||| Sbjct 3239 TATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGC 3298 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 |||||||| | || || || || ||||| | ||||| || ||| | Sbjct 3299 GGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTT 3358 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATG---GAACAACATTCCAAAAATCATATTGAAG 47536 | ||| | |||||| |||| | | |||||||| | |||| |||| || Sbjct 3359 CAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAG 3418 Query 47537 AATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAG 47596 | ||| |||| || ||||| | | |||||| ||| ||||| || | || || Sbjct 3419 CAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAG 3478 Query 47597 TTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATT 47656 ||||||||||| || | ||| ||| |||||||| |||||||| | | ||||| || Sbjct 3479 CTCACAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTT 3538 Query 47657 CCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 ||| || ||| |||||| | ||||| || |||||| | ||||| Sbjct 3539 CCTGGCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTG 3598 Query 47717 AACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC-TTCTGGTAATGGAT 47775 || || | ||||| ||| ||||| | |||||| | | || ||||| | |||| Sbjct 3599 TACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGAT 3657 Query 47776 ATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTA 47835 | | ||| |||| || ||||||| || | ||| || Sbjct 3658 AATATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATA 3717 Query 47836 ATTTATTAAAATCAAACTTGTTATT-----TAT-AACAAACCTATTAAGTGCTATAGATG 47889 || |||||||| || || ||||| ||| |||||| | | || ||||||||| Sbjct 3718 GCTTTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATG 3777 Query 47890 CTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGAT 47949 | | ||||| || || ||||| |||| | ||||||| | || ||||| | |||||||| Sbjct 3778 CCAAGTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGAT 3837 Query 47950 TACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGT 48009 | | | |||| || ||||||| |||||| ||||| | ||| ||| ||||| | Sbjct 3838 TGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTAT 3897 Query 48010 AAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCC 48069 | ||||| || || || || || || || || | ||| | ||||| | Sbjct 3898 AGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT-----GTAGCAATGCAAAC---CA 3949 Query 48070 TAGCCTTTATAACAGCTCTA---GCTTTATTATC---ATGTTCGTATT--TAGT----AT 48117 | |||| | ||| || | ||| || | | ||| | || |||| || Sbjct 3950 CAAACTTTGT----GCTTTAATTGTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCAT 4005 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 |||| | | ||||| || || | |||| | | |||||| ||||||| |||||||| Sbjct 4006 ATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACA 4065 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | |||| ||| | |||| || | |||||| ||| || | ||| |||||||| || | Sbjct 4066 TTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTG 4125 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 || ||||| ||| | ||| | || || || ||| ||| | | | || | || Sbjct 4126 CTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAA 4185 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | |||| | ||| |||||||| ||||| ||||| | || | | |||| | ||| Sbjct 4186 ATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTC 4245 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 || ||||| || | ||| | || |||| ||||| || | | |||||| | | || Sbjct 4246 CTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAAC 4305 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 |||| || ||||||| || || || || ||| ||||| ||||||| || | Sbjct 4306 CATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAG 4365 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | |||| ||||| || | || ||| ||||| || || |||||| ||| Sbjct 4366 CCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTCTTTAGTGTATCAAAAA 4425 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 | || || || |||||| ||| || | | ||||||| ||||| || || || Sbjct 4426 TGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAA 4485 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 ||| || | ||| |||||||| |||| |||||| |||| | |||| || | || || Sbjct 4486 GAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTT 4545 Query 48658 TATATGTTTCAATAACAGAATCTATA-TCCCATTGATGTATACCTATAGATACACGCATT 48716 ||| |||||||| | | ||||||| | |||| | || ||||| || || | |||| Sbjct 4546 CATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACCACAGGAGACTCTCATT 4604 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 || | | ||| || ||||| ||||| || | || | || | ||| ||| |||| Sbjct 4605 AATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCT 4664 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | || |||||| ||||||||| ||| ||| || Sbjct 4665 AGAGTCTTAAAAGCAAAATAGTCATATTCAAAATC 4699 >seq240 Length=77866 Score = 206 bits (228), Expect = 3e-48 Identities = 361/511 (71%), Gaps = 17/511 (3%) Strand=Plus/Minus Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 |||||||||||||||||| |||||||| | ||| | ||| || | ||| ||||||| | | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-C 77806 Query 19062 AAATGAT-CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGC-AACTAGTCTTTCTCCA 19119 ||| | | |||||||| || |||||||| ||||| ||||||| || || ||||||| || Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCA-CAAAAGCCAATTACTCTTTCTGCA 77747 Query 19120 TAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT 19179 || | | |||||||| ||||| || |||||| || ||||| |||| || | Sbjct 77746 -AATGACCG--ATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCT 77690 Query 19180 GGCAT-TGTCTCTATAGAATTAAATAGATACATACGCTCATCTGT---ATCTTTAACATA 19235 || | ||| ||| | | ||| || ||| | |||| | |||| | ||| Sbjct 77689 GGTAAATGTGA-TATTGCTTCAAAAAG---CATTTGGCGATCTTTTACATCTGATATATA 77634 Query 19236 TGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCC 19295 | ||| || || | || |||| ||||| | || ||||| || |||||||| Sbjct 77633 TTGATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCC 77574 Query 19296 GTAAAAACATCTTGCTTCTGTTATCTGTA-CTTCACTACAAAATCTTTCGACCAAATTTT 19354 ||| | ||| |||||| ||| || | || | || ||||| || | | || || | Sbjct 77573 ATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCT 77515 Query 19355 CATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTT 19414 | | || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 77514 CCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTT 77455 Query 19415 CATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTG 19474 | | |||| | | |||||| | || || | | |||||||| ||||| | | Sbjct 77454 CTGGTTCCTTTAAACTTTCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAG 77395 Query 19475 TCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||||||| || || ||| ||||||| ||||| Sbjct 77394 TCCAAAATGAGGCTTCTTCTTTTTTGTACAT 77364 >seq141 Length=3141 Score = 136 bits (150), Expect = 4e-27 Identities = 254/367 (69%), Gaps = 6/367 (2%) Strand=Plus/Minus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||| ||||| || |||| ||| ||||| || |||||||| || | |||||| ||| | Sbjct 368 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 309 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||| ||||||||||||| | ||||| |||| ||| | ||| | | || |||| Sbjct 308 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 249 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATC-ACAATTCATTCCTATTAAT 18849 | ||| || ||||||| ||||||| | ||| | ||| | ||||||| || || | Sbjct 248 AACGATCAGCAACAAATTCAATATATTGGGCCATTA-ATCTAGAATTCATCCCAATGAGA 190 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||||||| || ||| | |||| |||| | | || || |||| |||||| Sbjct 189 TCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAATT 130 Query 18910 GATACAACTCTATCTTCAT--TAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | |||||| || ||| || | ||| || | |||| | | |||||| ||| Sbjct 129 TCTTGAACTCTTTC-ACATGGAAGACGATTATTTAATGT-TTTATAAAGTAAACATCCAA 72 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || ||| | || || |||||| ||| | |||||||||||||||||| ||||||| Sbjct 71 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 12 Query 19028 TCAGTCC 19034 | | ||| Sbjct 11 TTAATCC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106853698280