Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835725.1_202016- 10-24] 277 sequences; 9,081,779 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq240 183 4e-41 seq141 113 5e-20 >seq240 Length=77866 Score = 183 bits (202), Expect = 4e-41 Identities = 297/418 (71%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 37217 TTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGC 37276 |||||||||||| |||||||| |||||||| || | ||| |||| ||||||||| || | Sbjct 77864 TTCATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-C 77806 Query 37277 AAAAGAT-CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGA 37335 ||||| | |||||||| || |||||||||||||| |||| || | | || | | | Sbjct 77805 AAAAGCTGCCAGAAAACAAGATACCTTCAACTGCA-CAAAAGCCA-ATTACTCTTTCTGC 77748 Query 37336 AAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACAT- 37394 || | || | || || | ||||| ||| ||| ||| |||||||| |||||| | Sbjct 77747 AAAT-GACCGATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTG 77689 Query 37395 -TCAAT-TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAG 37452 | ||| || | ||||||| || || | | |||| ||||| |||||| Sbjct 77688 GTAAATGTGAT---ATTGCTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATT 77632 Query 37453 TATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCAT 37512 |||||||| | ||| ||||| |||||| | || ||||| || ||||| |||| Sbjct 77631 GATCAATTAAAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCAT 77572 Query 37513 AAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCAT 37572 || | |||||||| || ||||| || || ||||| | ||||||||| || Sbjct 77571 AATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCA 77512 Query 37573 TAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 | || || ||||||||||||||||| || || | |||||||| ||||||||| |||| Sbjct 77511 TTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC 77454 >seq141 Length=3141 Score = 113 bits (124), Expect = 5e-20 Identities = 258/384 (67%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| |||| ||||| | |||||| | || ||||| || || || |||| Sbjct 382 CATAACTCCTGCCATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTG 323 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA---TAGTACTACA 36988 || ||| ||| ||||| ||||||||||||| | ||| |||| | | | ||| Sbjct 322 TAATGAAATAAGATCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGA--ACA 265 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | || | | ||| | | ||| ||||||||||| || |||| ||||| | | | Sbjct 264 T-CTAGTGCAAACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGA 206 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| || | ||| || | || ||| | |||| ||| | | || Sbjct 205 ATTCATCCCAATGAGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAAC 146 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTG---GGGGATATTTTAAATATTT 37165 ||| ||| ||||| | | |||| |||| || | ||| ||||| ||| Sbjct 145 AGCTTCT---GCTATAATTTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTT 89 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 | | | ||||||| |||| || ||| | ||||||||||||| ||| | ||||||||| Sbjct 88 ATAAAGTAAACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGA 29 Query 37226 AAAGGTTAATCCTGGCATTAAACC 37249 ||| |||||||| |||||||| || Sbjct 28 AAATGTTAATCCAGGCATTAATCC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592314749103080